Duncaniella dubosii: E7747_12815
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Entry
E7747_12815 CDS
T09880
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ddb
Duncaniella dubosii
Pathway
ddb03030
DNA replication
ddb03410
Base excision repair
ddb03420
Nucleotide excision repair
ddb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E7747_12815 (ligA)
03410 Base excision repair
E7747_12815 (ligA)
03420 Nucleotide excision repair
E7747_12815 (ligA)
03430 Mismatch repair
E7747_12815 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddb03032
]
E7747_12815 (ligA)
03400 DNA repair and recombination proteins [BR:
ddb03400
]
E7747_12815 (ligA)
Enzymes [BR:
ddb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E7747_12815 (ligA)
DNA replication proteins [BR:
ddb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E7747_12815 (ligA)
DNA repair and recombination proteins [BR:
ddb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E7747_12815 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E7747_12815 (ligA)
MMR (mismatch excision repair)
DNA ligase
E7747_12815 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E7747_12815 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
WH_Rok
Zn_ribbon_NUD
DUF2335
Motif
Other DBs
NCBI-ProteinID:
QCD43085
UniProt:
A0A4P7W6Q7
LinkDB
All DBs
Position
2874691..2876709
Genome browser
AA seq
672 aa
AA seq
DB search
MSSVEQRIYELREQLDRHNHAYYVNNAPEISDYEYDMLMKELEKLETENPEFDDPLSPTH
RVGSDITKGFEQVVHQHPMLSLGNTYSVEEVDDWVRRCNDLLGNSSGLKSVPIVGEMKFD
GTSISLIYEKGRLVRAVTRGDGEKGDDVTENVKTIRSIPLKLRGEGYPDKFEIRGEIVLP
WKAFDRLNEERAFNEEPLFANPRNAAAGTLKMQNSSIVSRRGLDAYFYYLISDQLPCDNH
YDNMLRAKEWGFKVSSLMTLMNSIEEVDEFIRRLDIERKELPVATDGLVFKVNNLRQQLN
LGYTSKSPRWAIAYKFAAERALTRLRFVSFEVGRMGIVTPVANLEPVLLSGTIVKRASLH
NEDIVKTLGIHEHDMLYVEKGGEIIPKITGVDTAARENDAAPVRFVTLCPDCGTALIRIP
GEAAWQCPNKYGCRPQLIGRLEHFVGRHAMDIEGVGEENAALLYDAGLVKDIADFYTLKA
SDLEALERVGPRTAQRILEGVEASKSVPFDRVVYSLSIPFVGETVARKLARGVGDIDTLL
AMSREELVAIDDIGPKIADAVIEYFCVHSNRTIVERLREAGVQMEMPEEDKSGHSDILAG
KTIVISGVFSLHSREEYKEMIEKNGGKNSGSISKKTSFVLAGDNMGPAKLEKARSLGVPV
IDESAFLEMIGK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgtcgaacaacgtatctacgagctacgcgaacagctcgaccgacacaaccat
gcctactatgttaataatgcccctgagattagcgactatgaatacgacatgctgatgaag
gagcttgaaaagcttgaaactgagaatcctgaatttgacgaccctctgtcgccaactcat
cgtgtcggatcagatataacaaagggcttcgagcaggtggtgcaccagcatcccatgttg
tcgcttggcaatacatatagtgttgaagaagtcgatgactgggtcagacgctgcaatgat
ttacttggaaattcgtcaggtttgaaatcagttcctattgttggtgaaatgaagtttgac
ggtacgagtatctcgctgatttatgaaaaaggcagacttgtccgtgctgtcaccagagga
gacggtgaaaagggcgatgatgttactgaaaacgtaaaaacaatcaggagtatccctctc
aaactacgcggagagggataccctgataaatttgaaataagaggcgagatagtcttgcct
tggaaagctttcgaccgtctcaacgaggaacgtgctttcaacgaagagcctctgtttgcc
aatccgcgcaatgcggcggcaggaactctgaagatgcagaattcttcgattgtctcgcgt
cgtggtcttgacgcatatttctactatcttatttccgatcaacttccgtgtgacaatcat
tacgacaacatgttgcgtgcaaaagaatggggattcaaggtcagtagcctgatgacgctg
atgaattcaatcgaagaggtcgacgaatttatcagaaggcttgacattgagcgcaaagag
ctgcctgttgcgacggatggacttgtttttaaggtcaacaatcttcgccagcagttaaat
cttggctatacttcaaagtcgccgcgctgggctatcgcctacaagtttgctgctgaaagg
gctttgacccgactccgttttgtctcgtttgaggttggtcgtatgggcatagtgacacct
gtggcgaatcttgaacctgtattgctttcaggtacgatagtgaaacgtgcttctcttcac
aatgaggacatagtgaagacactcggtatacatgaacacgacatgctctatgtggaaaag
ggcggagagattattccgaagataacaggagtcgacactgccgcgcgtgagaatgatgcc
gcgcctgtcaggtttgtcaccctttgtccggattgcggaacagctctgattcgtattccc
ggtgaagctgcttggcagtgtcccaacaaatatggatgtcgtccgcagcttataggacgg
ttggaacattttgttggccgtcatgctatggatattgaaggtgtaggagaggagaatgcc
gcacttctttatgatgccgggcttgtgaaggatatcgctgatttctatacgttgaaagca
tccgaccttgaagctctcgaaagagtcggacctcgtactgcgcagagaattctcgaagga
gtcgaagcctccaagtctgtgccttttgacagagtggtctattcgctttccataccattt
gtcggtgagacggtcgcacgaaagcttgcgcgtggagtgggggatatcgatacgcttctt
gccatgagtcgtgaagaattggttgctatcgacgatattggtccgaagattgcggatgcg
gttatagagtatttctgtgtccattccaacaggactatagtcgagcgcttgcgtgaagcc
ggtgtgcagatggagatgccggaagaggataaatcgggccattccgatatccttgccggt
aagaccatcgtaatcagtggagttttttccctccattcgcgggaggaatataaggaaatg
attgagaaaaacggaggtaagaattccggttcgatttcaaagaagacatcatttgttctc
gctggcgacaatatggggccggccaaacttgaaaaagcccgttcgcttggagtgcctgtc
atagatgaatcagcctttttggagatgataggaaagtaa
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integrated database retrieval system
