Dickeya dadantii 3937: Dda3937_01130
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Entry
Dda3937_01130 CDS
T01305
Symbol
yicF
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ddd
Dickeya dadantii 3937
Pathway
ddd03030
DNA replication
ddd03410
Base excision repair
ddd03420
Nucleotide excision repair
ddd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dda3937_01130 (yicF)
03410 Base excision repair
Dda3937_01130 (yicF)
03420 Nucleotide excision repair
Dda3937_01130 (yicF)
03430 Mismatch repair
Dda3937_01130 (yicF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddd03032
]
Dda3937_01130 (yicF)
03400 DNA repair and recombination proteins [BR:
ddd03400
]
Dda3937_01130 (yicF)
Enzymes [BR:
ddd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dda3937_01130 (yicF)
DNA replication proteins [BR:
ddd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dda3937_01130 (yicF)
DNA repair and recombination proteins [BR:
ddd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dda3937_01130 (yicF)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dda3937_01130 (yicF)
MMR (mismatch excision repair)
DNA ligase
Dda3937_01130 (yicF)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dda3937_01130 (yicF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
RNA_ligase
HHH_2
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ADM96258
UniProt:
E0SEK5
LinkDB
All DBs
Position
46625..48310
Genome browser
AA seq
561 aa
AA seq
DB search
MMRYRYALAAVLFAVSGLAEAASCPAWSSTRAEQEITQLGQQLTQWDNAYYEQGQSPVDD
QVYDQLRQTLATWQVCFQADAGRFAISLPTTGRRQHPVAHTGLKKLSEPTELKQWIAQHN
DLWVQPKIDGVAVTLVYEQGKLVAAISRGNGRQGEDWTDKVRQMNSVPQQLSAMSGRQVF
QGELYLQVTDHRQQQVGGINARAQVAGEMRRKQPSPLLSRIGVFVWAWPDGPADMPARLA
KLRELGFGLTADYTQPVSSLEAAAQWRERWYRAPLPFVTDGVVVRQAQEPAGRYWQDTPA
EWAVAWKYPLVNRVTEVTGVDVEVGRTGRMTVVLQLQPVILDDKTVSRVNLGSVSRWRQW
DVLPGDRVSISLAGLGIPRLDAVVWRGAVREAITVPATSPFDVFSCLQWSRECQPQFLAR
LVWMSGRNGLSLSGISEATWQRLTQRGALVDVVSWLALEPAQLAAAGDFGEQQAERIHRQ
FQLARRQPLRNWLLALGLPVPSRVRHALDGASLEQLQQRSAAEWQQFSGIGVRRAQRIRD
FLHHTDIVRQLAWLNEHGVKS
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgatgcgatatcgatacgcgctggctgcggtgttgtttgctgtgagcggactggctgaa
gcggcgtcttgtccggcatggtcgtcgacgcgggctgaacaggagatcacccaactgggg
cagcaactgacgcagtgggacaacgcttattacgaacagggccagagcccggtggacgat
caggtttacgatcagctgcgtcaaacgctggcgacctggcaagtctgttttcaggcggat
gccggacgttttgcgatcagtctgccgactaccggtaggcggcagcatccggtggcgcac
accggcctgaaaaagctgtcggagccgaccgagctgaaacagtggatcgcgcaacataat
gatttgtgggtgcagcccaagatcgatggcgtggcggtaacgttggtgtacgagcaaggg
aagttggttgccgcgatcagtcgcggcaatggccgtcagggtgaggactggaccgacaaa
gtgcgccagatgaattcggtgccgcagcaactttccgccatgtctggccggcaggttttt
cagggagaattgtatttacaggtgacggatcaccgtcagcagcaggtcggcggtatcaac
gcgcgagcgcaggtagcgggtgaaatgcggcgaaaacagccttcgccgctgctgtcgcgc
attggcgtatttgtttgggcctggccggacggtccggcggacatgccggccagactggcg
aaattacgggagctggggtttgggctgacggcggattacacgcaacccgtttcctcgctg
gaggcggcggcgcagtggcgtgagcgctggtatcgagcgccgctgccgtttgtgaccgat
ggtgtggttgtgcggcaggcgcaagaacccgccgggcgttactggcaagacaccccggcg
gaatgggcggtggcctggaaatatccgttggtgaaccgggtgacggaagtcaccggcgtc
gacgttgaagtggggcgtaccggcagaatgaccgtggtgttgcaattgcagccggtcatt
ctggatgacaaaaccgttagtcgggtcaatctcggttcggtatcccgctggcggcaatgg
gatgtattgccgggggatcgggtcagcatcagtctggcggggttggggattccccggctg
gacgctgtggtttggcgcggtgcggtgcgtgaagcgataaccgtcccggcgacgtcgcct
tttgatgttttcagttgtttgcaatggagccgcgagtgccagccgcagtttctggcccga
ctggtatggatgagcgggcgcaacgggttgtcgctcagcggcatcagcgaagccacctgg
cagcgcctgacacagcgaggcgcgctggtcgatgtggtgtcctggctggcgcttgaaccg
gcgcaactggcggcggccggcgatttcggcgaacaacaggcggaacggattcatcgtcag
tttcagttggcgcgtcgccagccgttgcgaaactggttgctggcattagggttaccggtg
ccatcccgcgtccggcacgcgctggatggcgcatcgctcgaacagttgcagcagcgttcc
gcggcggaatggcagcagttttccggtattggcgttcgtcgggcgcagcgcattcgagac
tttctgcaccacaccgatatcgtcaggcaactggcatggctcaatgaacacggcgtgaaa
tcatga
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