Dickeya dadantii 3937: Dda3937_04309
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Entry
Dda3937_04309 CDS
T01305
Symbol
ygdE
Name
(GenBank) predicted methyltransferase
KO
K06968
23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:
2.1.1.186
]
Organism
ddd
Dickeya dadantii 3937
Brite
KEGG Orthology (KO) [BR:
ddd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ddd03009
]
Dda3937_04309 (ygdE)
Enzymes [BR:
ddd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.186 23S rRNA (cytidine2498-2'-O)-methyltransferase
Dda3937_04309 (ygdE)
Ribosome biogenesis [BR:
ddd03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Dda3937_04309 (ygdE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RLMM_N
RlmM_FDX
FtsJ
Spt5-NGN
MIT_C
Motif
Other DBs
NCBI-ProteinID:
ADM97268
UniProt:
E0SCB8
LinkDB
All DBs
Position
1130213..1131313
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AA seq
366 aa
AA seq
DB search
MNKVILYCRPGFEKECAAEITDKAARYNVYGFVRVKDNSGYVMFECYQHEDADRLIKELP
FRELVFARQMMVCGELLRDLPPEDRITPIVGMLTGAMERAGELRVEVPDTNESKELMKFC
RKFTVPLRAALRENRILLAQEKANRPVIHVLFIAPGCCYVGYSYSNNNSPFYMGIPRLKF
PADAPSRSTLKLEEAFHTFVPADEWDERLGSGMYAVDLGACPGGWTYQLVKRSMMVHAVD
NGMMAPSLMDTGQVIHHQADGFRFEPPRNNIYWLVCDMVEKPAKVTNRMADWLVNGWCRE
VIFNLKLPMKKRYEEVTQNLALLAQRLEENGINFEIHAKHLYHDREEVTVHARRIWGAIP
GRRDER
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagtgattttgtactgccgccctggatttgagaaagagtgcgcggcggaaatt
accgacaaggcggcgcgttataacgtctatggctttgtgcgggtaaaggataacagcggg
tatgtgatgtttgagtgctaccagcacgaagacgccgatcggctgattaaggaattaccg
ttccgggaactggtgttcgcacgccagatgatggtatgcggcgaattgctgcgcgatctg
ccgccggaggatcgcatcacgccgatagtcgggatgctgaccggggcgatggagcgcgcc
ggagagctgcgggtggaagtgccggataccaacgaaagcaaggaactgatgaagttctgc
cgcaagttcacggtgccgctgcgcgccgcgctgcgggaaaaccgcatcctgctggcgcag
gagaaagccaaccgcccggttatccatgtattgttcatcgctcccggttgctgctatgtc
ggctactcctacagcaataacaattcgccgttctatatggggattccgcggctgaaattc
cccgccgatgctcccagccgctcgacgctgaagctggaagaagcctttcataccttcgtg
ccggcggacgagtgggacgaacgattgggcagcggcatgtatgcggttgatctgggcgct
tgccccggcggctggacctatcaactggtgaaacgcagtatgatggtgcacgccgtcgat
aacggcatgatggcgccaagcttgatggataccgggcaggtcattcaccatcaggcagac
ggtttccgctttgagccgccgcgcaacaatatctactggctggtgtgcgatatggtggaa
aaaccagctaaagtcaccaaccgcatggccgactggctggtcaatggctggtgccgtgaa
gtgatcttcaacctgaagctgccgatgaaaaagcgctacgaagaagtgacccagaatctg
gccttgctggcgcagcggctggaagagaacggcatcaattttgaaattcacgccaaacat
ctctatcacgatcgtgaagaggtcaccgttcatgcacggcgtatctggggtgcgattccc
ggccgacgcgacgaacgctga
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