Oleidesulfovibrio alaskensis: Dde_2093
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Entry
Dde_2093 CDS
T00294
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dde
Oleidesulfovibrio alaskensis
Pathway
dde03030
DNA replication
dde03410
Base excision repair
dde03420
Nucleotide excision repair
dde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dde_2093
03410 Base excision repair
Dde_2093
03420 Nucleotide excision repair
Dde_2093
03430 Mismatch repair
Dde_2093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dde03032
]
Dde_2093
03400 DNA repair and recombination proteins [BR:
dde03400
]
Dde_2093
Enzymes [BR:
dde01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dde_2093
DNA replication proteins [BR:
dde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dde_2093
DNA repair and recombination proteins [BR:
dde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dde_2093
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dde_2093
MMR (mismatch excision repair)
DNA ligase
Dde_2093
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dde_2093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
RNA_ligase
PTCB-BRCT
HHH
5_3_exonuc
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
ABB38890
UniProt:
Q30ZK6
LinkDB
All DBs
Position
complement(2141016..2143112)
Genome browser
AA seq
698 aa
AA seq
DB search
MKQDSAKVEQRMEELRTLLEYHGHRYYVMDEPEISDAEYDALFRELVRLEEEHPEHIHPG
SPTHKVGGQILDGLKPREHSLRMYSLDNAFGIEEFREFVERVVRLEPDAPLEFWVDPKMD
GLAMELVYENGVFLLAVTRGDGSMGEDVTHTMRTVRNVRMRLNPEIEAPVRLEVRGEVII
TRADFEALNARQQQKGGKLFANPRNAAAGSVRQLDSSVAAARPLRFMAYGVGQVVWADGR
QRWRTQYDIMRGLQELGFAVPSQGRLCAAPADVEAAFTELSAARHELPFEIDGVVAKLND
LDLQEALGFTARAPRWAIALKFPAHQARTRLKDIRIQVGRTGVMTPVAELEPVTVGGVTV
SSATLHNEDEIRAKGLMLGDVVIVQRAGDVIPEVVRAVPEERTGAEREYVFPAVCPVCGS
AAVRGEGEAAWRCTNMQCPAVRKQAIIHFVSKAGLDIDGVGRKWIEQLVDSGRVVSPADL
FRITREDLLGMERMGEKLASNFIEAFDSARHESTLQRFICALGIRHVGEQTARTLAARFG
NMDELMRADQETLQSLRDIGGEVAGSIRAFFANGQNRELLQQFKNLGLWPEEQQPAGDST
PVTPLAGKKILFTGSLVRMTRSEAKAMAEKAGAAVMSGVSARLDILVAGDKPGSKLEKAR
SLGITVLTEDEFIRQASESEEISGQAADDYENSLLRVQ
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcaggattcggccaaggttgaacagcgcatggaagaactgcgcactttgctggag
tatcacggtcaccggtactacgtgatggatgagcccgaaatatccgatgcggagtacgat
gcccttttcagggaactggtgcggctggaggaggaacaccctgagcatatccatccgggg
tcgcccacgcataaggttggcgggcagatactagacggactgaagccccgtgagcactcc
ctgcgcatgtacagtctggataacgcattcggtattgaagagttccgcgaatttgtcgag
cgcgttgtccggctggaacctgatgctccgcttgaattctgggttgaccccaaaatggac
gggttggccatggaacttgtttatgaaaacggagtgtttttgctggctgtgacccgcgga
gacggcagcatgggggaagatgtgacccacaccatgcgcacggtacgcaatgtccgcatg
cggctgaatccggaaattgaagcacccgtgcggcttgaagtgcgtggagaggttattatc
acccgcgccgattttgaagcgcttaatgcgcggcagcagcagaaggggggcaaactgttc
gccaacccccgcaatgccgccgcaggctctgttcgccagctggattcttccgtggcggcg
gcgcgccctctgcgtttcatggcatatggcgtggggcaggttgtctgggcggacggcaga
cagcgctggcggacccaatatgacataatgcggggactgcaggagcttgggtttgccgta
ccttctcagggcagactgtgcgctgcgcctgcagatgtggaagccgcttttaccgagctt
tctgccgcgcggcatgaactgccgtttgaaatagacggcgttgtcgccaagctgaacgac
cttgacctgcaggaggctctggggtttacggccagggctcctcgctgggccattgcgctt
aaatttcccgcgcatcaggcgcgtacccgccttaaggacatcagaattcaggtggggcgg
actggtgtgatgacgcctgtggccgagcttgagccggtgactgtgggcggggtgactgtt
tccagcgccactttgcataatgaagatgaaatacgtgccaagggccttatgctgggcgat
gttgtcattgtgcagcgggcgggggatgtgattcccgaagtggtacgcgcggtgccggaa
gaacgcaccggagctgaacgtgagtatgtttttcctgccgtgtgtcctgtctgcggcagt
gctgccgtgcgcggcgaaggggaggccgcctggcgctgcaccaatatgcagtgccctgcc
gtgcgcaagcaggcaatcattcattttgtttccaaggccggtctggacatagacggagtg
ggtcgcaagtggattgagcagctggtggacagcggcagggtggtttctccggctgatctt
ttccgcattacgcgggaggacctgctgggcatggagcgcatgggcgaaaaactggcttcc
aattttatagaggcttttgattcggcacgccacgaatccacgctccagcgtttcatctgc
gcgctgggtatccgccatgtgggtgagcagactgccagaacgcttgccgcccgtttcggc
aatatggacgaactgatgcgtgccgatcaggagacattgcagtctctgcgtgatatcggc
ggcgaggtggccggttccatacgagctttttttgccaacgggcagaacagggagcttttg
cagcagttcaagaatcttggtctgtggcccgaggagcagcagcctgcaggtgacagcacg
ccggtgacaccgcttgcgggcaaaaaaattctttttaccggttcgctggtgcgtatgacg
cgctctgaagccaaagctatggcagaaaaagcgggggcagccgtcatgagcggcgtttcc
gccagacttgatatacttgtggccggagacaagcccggcagcaagctggaaaaagcccgt
tcactgggaataacggttctgacggaagatgaattcatcaggcaggcatcagagtctgaa
gaaatttccggacaggctgcagatgactatgaaaacagtctgctgcgcgtgcagtag
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integrated database retrieval system
