Dechloromonas denitrificans: KI615_14495
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Entry
KI615_14495 CDS
T08301
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dden
Dechloromonas denitrificans
Pathway
dden03030
DNA replication
dden03410
Base excision repair
dden03420
Nucleotide excision repair
dden03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dden00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KI615_14495 (ligA)
03410 Base excision repair
KI615_14495 (ligA)
03420 Nucleotide excision repair
KI615_14495 (ligA)
03430 Mismatch repair
KI615_14495 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dden03032
]
KI615_14495 (ligA)
03400 DNA repair and recombination proteins [BR:
dden03400
]
KI615_14495 (ligA)
Enzymes [BR:
dden01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KI615_14495 (ligA)
DNA replication proteins [BR:
dden03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KI615_14495 (ligA)
DNA repair and recombination proteins [BR:
dden03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KI615_14495 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KI615_14495 (ligA)
MMR (mismatch excision repair)
DNA ligase
KI615_14495 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KI615_14495 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
BRCT_2
DUF7340
Motif
Other DBs
NCBI-ProteinID:
UCV06610
LinkDB
All DBs
Position
complement(3048676..3051063)
Genome browser
AA seq
795 aa
AA seq
DB search
MAVPVAEAERAAWLRSELERHNVAYYVFDAPTIPDAEYDKLFRELQGLEAQYPDLLTADS
PTLRVGGQPLTQFAPVRHDVPMLSIQTETDTESSGALNFDARLRRELELPASAPFIEYAA
ELKFDGLAISLRYEHGVLVRGATRGDGVTGEDVTQNLRTLRQIPLRLLGAAPPLLEVRGE
VYMRRDDLEKYNAAAAARGDKTLVNPRNAAAGSIRQLDPAIAASRPLCFFAYGLGAVDGW
NMPETHAGVLDALAAFGLPVCEHRAVLAGGEALAGFHRQVAELRDSLPFDIDGVVYKVNS
LALQARLGFRSREPRWAVAHKYPPQEALTVVEAIDIQVGRTGALTPVARLAPVFVGGVTV
TNATLHNADEVERKGGICVGDTVIVRRAGDVIPEVVGVVAERRPAAAQPFAMPDACPVCG
AHVVREPGEAVTRCSGGFSCSAQRIQAILHFAGRRMMDIEGLGERYVERLVEFGYVHGVA
DLYRLKLNDLLEMKRRADERDGNVAETAKAGQTPTRWAENLLDGIAASRRPSLARLLFAL
GIRHVGESTAKTLADWLGSIERVRRAPAPLLAVLPDIGATVATAIADFFAEERNVQAVDE
LLCPEIGVAPADEHAPRHGLAERLTWSELYAVLGVPRLTPVRARQLAVVIDGATLATQGI
NGAALSGAGIPGEVITALGDWMQARGNRGLLAAVATRRDELLAALPAATGQDGAEAPLAG
KTCVLTGTLPTLKRDEAKAMIEAAGGKVAGSVSKKTDFVVAGEEAGSKLEKALELGVSVI
DETELLKLLEKGVEE
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgccggttgcggaggccgagcgcgcggcttggctgcgcagcgaactggaacgt
cacaatgtcgcttattacgtgttcgatgcaccgaccattccggatgccgagtacgacaag
ctgttccgcgaactgcaaggactggaagcgcagtatcccgatctgctgacggccgattcg
ccgaccttgcgggtgggcggccagccgctgactcagtttgccccggtacgccacgacgtg
ccgatgttgtcgatccagaccgagaccgataccgagtcttccggcgccctgaatttcgac
gcgcgcctccggcgtgagctggaattgccggcctccgcacctttcatcgagtatgcggcc
gaattgaaattcgacggtctggcgatcagcctgcgctacgagcacggtgtgctggtgcgt
ggtgcgacgcgtggcgacggcgtcaccggcgaagacgtgacgcagaacctgcgcacgctg
cgccagattcccctgcgcctccttggcgctgcgccgccgttgctggaagtgcgcggcgag
gtgtacatgcggcgtgacgacctcgagaaatacaacgcggccgctgcggcgcggggcgat
aagaccctggttaatccacgcaatgccgccgccggcagtattcgccagctcgatccggcg
attgccgcgagccggccgctgtgtttcttcgcctacggcctcggtgcggtcgacggttgg
aacatgccggaaacccacgctggcgtgctcgacgcactggcggcctttggcctgccggtc
tgcgaacaccgcgcggtgctggccggtggcgaggcgctggccggtttccatcggcaggtc
gccgaattgcgcgacagcctgcctttcgatatcgacggcgtcgtgtacaaggttaatagc
ttggcgctgcaggcccgcctcggtttccgctcgcgcgagccgcgctgggcggtggcgcac
aaatacccgccgcaggaagcgttgaccgtagtcgaggcgatcgacattcaggtcggccgt
accggtgccctgacgccggtggcgcgcttggcgccggtctttgtcggcggcgttacggtg
accaatgcgaccttgcacaatgccgacgaagtcgagcgcaagggcggcatctgtgttggc
gacacggtgatcgtgcgtcgcgccggtgacgtcatccccgaggtggtcggcgtcgtcgcc
gaacgccggcccgctgccgcacagcccttcgccatgcccgacgcctgcccggtatgcggt
gcccacgtcgtgcgcgagccgggcgaggcggtaacgcgctgttccggcggtttttcctgc
agtgcgcagcgcatccaggccatcctgcatttcgccgggcgccgcatgatggatatcgag
gggctgggcgagcgttatgtcgagcgcctggtcgagttcggctacgtgcatggcgttgcc
gacctttatcgcctcaagctcaatgacctgctcgaaatgaagcggcgtgccgacgagcgc
gacggcaacgtggcggaaacggccaaggccggccagacaccgacgcgctgggccgagaat
ctgctcgacggtatcgccgccagccgacggcccagtctcgcccgcctgctgtttgcgctg
ggtatccgccatgtcggcgagtcgaccgccaagacgctggccgactggctgggtagcatc
gagcgcgtacgccgggcgccggcaccgctgctcgccgtgctgcccgatatcggcgctacg
gtggcgacggcgattgccgacttctttgccgaagagcgcaatgtccaggcggtcgacgag
cttctttgcccggaaatcggcgttgcgccggccgacgagcatgcgccgcggcacggcctg
gccgagcggctgacttggagcgagttgtacgcggtgctcggcgtaccccggctgacgccg
gtgcgggcgaggcaactggcggtcgtgatcgacggggcgacgctggccacgcagggtatc
aacggtgctgcgctgtcgggcgccggcattcccggcgaggtcatcacggcacttggcgac
tggatgcaagcacgcggcaatcgtggtttgctggcggccgtggcgacccgccgcgacgaa
ctgctggccgctctgccggccgcaactgggcaggatggcgcagaggcgccgctggccggc
aagacctgcgttctcaccggcacgctgccgacgctgaaacgcgatgaggcaaaggcgatg
attgaagccgccggcggcaaggtggccggttcggtatcgaagaaaaccgatttcgtagtg
gccggcgaggaagccggctccaagctggaaaaagcgttggagttgggcgtgtcggtgatc
gatgaaacagagttgttgaaattgctcgaaaagggagtcgaagaatga
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