Dictyostelium discoideum (cellular slime mold): DDB_G0283359
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Entry
DDB_G0283359 CDS
T00245
Symbol
eftud2
Name
(RefSeq) U5 small nuclear ribonucleoprotein subunit
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DDB_G0283359 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ddi03041
]
DDB_G0283359 (eftud2)
Spliceosome [BR:
ddi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
DDB_G0283359 (eftud2)
Complex C
U5 SnRNP specific factors
DDB_G0283359 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Septin
Motif
Other DBs
NCBI-GeneID:
8624044
NCBI-ProteinID:
XP_639111
dictyBase:
DDB_G0283359
UniProt:
Q54R72
LinkDB
All DBs
Position
4:complement(<569125..>572263)
Genome browser
AA seq
1018 aa
AA seq
DB search
MSDNLYDEFGNYIGESLEDEEVTYDQQQQQQEEEEEEDRKPNQQQQQQQYNDDEAHIEET
GDNDGGDEMNIDRDNIQISTTSAIVLHEDKQYFPDASDVYKGVEVMVQDEDSQPLSKPII
DPKKNKSFTITEKDYPETSYSKQFLTDLSTYPQFIRNVSLIGQLHHGKTSFMDMLFQQTH
EKKWLSSKPMRYTDTRNDEQERLISIKSTPMSLVLPNSKDKSYLINILDTPGHPNFLDEV
TASIALSDIAVIIIDALEGVMMQTERLIKHAVAEGLSICVVINKMDRLILELKLPPVDAY
FKLKHTIDEVNSILDLCSHGSGSGGSDGNTRGSANEKIKVSPELGNVIFASSEMGWCFSL
ESFANIYIETYGGGFKSSEFAKRLWGDLYFNESTRMFRKQASGNGEHVRSFVHFILNPIY
KIYSTVISEEKPVVEATLRELGIKLSKETYNLDIRPLLRVVLGSFFGGKSNAFVDMLAAL
PSPIDNARRKATTLYTGPLNGEYGRSLVECDPKGPLLIYITKLLSKPDGKGFDCLGRIMS
GSISKGQSIRVLREKYSPDNNEEDMEECECEGVFIGEARYKIEIEKAQAGMWVLLDGVDG
PIVKTATITSKKDLSSDEDENRAHIFRPLHFITKSVCKVAIEPINPSELPKMLDGLRKID
KSYPLAITKAEESGEHVILGTGELYLDCILHDLRLMYTEIEIKVDDPVITLTETIVETSS
IKCYADTQNKKNRLTMIAEPLENGLADDIENGMVKLDWPKKKRSEYFQSKYDWDVLASNS
IWAFGPDINGPNILLNDTLPTEVNRSLLLSISDSVVRGFQWATKEGPLVDEPIRNVKFKL
LDATIASEPIQRSSGHIVPAARSVTHSSFLVSTPRLMEPVYLVEVISPIDCLNAIENVLT
RRRGHIIHDLPKPGTPLHITKALIPVLDSYGFETDLRVHTQGQAFCLSTFDHWQVVPGDP
LDKSIKLRPLEPSPKLHLARELLIKTRKRKGLSEDVNFGKHFDEQLLLSLSQNENQYR
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataatttatatgatgaatttggtaattatattggagaaagtttagaagatgaa
gaagtaacatatgatcaacaacagcaacaacaagaagaggaggaggaagaggatagaaaa
ccaaaccaacaacaacaacaacaacaatataatgacgatgaagcacatatagaagaaaca
ggagataatgatggtggtgatgaaatgaatatagatagagataatatacaaatttcaaca
acatcagcaattgtattacatgaagataaacaatattttccagatgcatcagatgtttat
aaaggtgttgaagttatggtacaagatgaagattcacaaccattatcaaaaccaatcatt
gatccaaagaaaaataaatcatttacaatcactgaaaaagattatccagaaacaagttat
tctaaacaatttttaaccgatttatcaacatatccacaattcattagaaatgtttcttta
atcggtcaattacatcatggtaaaacttcattcatggatatgttatttcaacaaactcat
gaaaagaaatggttaagttcaaaaccaatgagatatacagatactagaaatgatgaacaa
gaaagattaatatcaataaagtcaacaccaatgtcattagttttaccaaattcaaaagat
aaatcatatttaattaatatattagatacaccaggacatccaaactttttagatgaagtt
actgcatcaattgcattatcagatattgctgtaattatcattgatgcattagaaggtgta
atgatgcaaactgaaagattaattaaacatgctgttgctgaaggtttatcaatttgtgtt
gttataaataaaatggatagattaatattagaattaaaattaccaccagtagatgcatat
tttaaattaaaacatacaattgatgaagttaattcaattttagatttatgttcacatggt
agtggtagtggtggtagtgatggtaatactagaggtagtgctaatgaaaagattaaagta
tcaccagaattaggtaatgttatttttgcaagttcagaaatgggttggtgttttagttta
gaatcattcgcaaatatttatattgaaacttatggtggtggttttaagagtagtgaattt
gctaaaagattatggggtgatctttattttaatgaaagtacacgtatgtttagaaaacaa
gcatcaggaaatggtgaacatgtaagatcatttgtacactttattttaaatccaatttat
aagatttattcaactgtaattagtgaagagaaaccagtggttgaagcaaccctaagagaa
ttgggtattaaactttcaaaagaaacttataatttagatattagaccattgttaagagtt
gtattgggttcatttttcggtggtaaatcaaatgcatttgtagatatgttggcagcatta
ccatcaccaattgataatgctagacgtaaagcaacaacactctatacaggtccattgaat
ggtgagtatggcaggtcattggtggaatgtgatccaaagggtccattgctaatttatatc
acaaagttattatcaaaacccgatggtaaaggattcgattgtttaggtcgtattatgtct
ggtagcattagtaaaggtcaatccattagagttttacgtgaaaaatactcaccagataat
aatgaagaagatatggaagaatgtgaatgtgaaggcgttttcattggtgaagcacgttat
aaaatcgagattgaaaaagcacaagcaggtatgtgggttttattagatggtgtcgatggt
ccaatcgtaaagactgccaccattacctcaaaaaaagatttatcatctgacgaggatgag
aatagggcacatattttccgtccacttcatttcataactaaatcagtttgtaaggttgca
atcgaaccaatcaatccatcggaattaccaaagatgttggatggtttaagaaagatcgat
aaatcctatccattggcaattacaaaggctgaggaatcgggtgaacatgttattttaggt
acaggtgagctttatttagattgtattttacatgaccttagattaatgtatacagagatt
gaaatcaaagtagatgatccagttatcacattgacagaaacaatcgttgaaacttcatca
attaaatgttatgctgatactcaaaataaaaagaatcgtctaacaatgatcgctgaacca
ttggagaatggattagccgatgatattgaaaatggtatggtgaaactggattggccaaag
aaaaagagatcagaatatttccaatcaaagtacgactgggatgttttagcctccaattcg
atttgggcatttggtccagatatcaatggtccaaatatcctattgaacgataccctccca
actgaagtgaacagatcccttctattatccatctctgattccgtggttagaggcttccaa
tgggccactaaagaaggtccattggttgatgaaccaattagaaatgtaaaattcaaacta
ttggatgccaccattgcctctgaaccaattcaaagatccagtggccatattgtacctgcc
gcacgttctgtaacacattcatcatttttagtatcaacaccacgtttaatggagcctgtt
tatctagttgaagtaatctcaccaatcgattgtctcaatgcaatcgaaaatgttttaaca
cgtcgtcgtggtcatatcattcatgacttgccaaaacctggtacaccacttcacattaca
aaagctttaatacccgtattggattcatatggttttgaaaccgatcttagagttcatact
caaggtcaagctttctgtctttcaacatttgatcattggcaagtggttccaggtgatcct
ttagataaatcaattaaacttcgtccattagaaccttctccaaaacttcatttggctcgt
gaacttttaatcaaaactcgtaagagaaaaggtctatctgaagatgttaattttggtaaa
catttcgatgaacaacttttattatctttatctcaaaatgaaaatcaatatagataa
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