Pseudodesulfovibrio mercurii: DND132_0282
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Entry
DND132_0282 CDS
T01709
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ddn
Pseudodesulfovibrio mercurii
Pathway
ddn03030
DNA replication
ddn03410
Base excision repair
ddn03420
Nucleotide excision repair
ddn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DND132_0282
03410 Base excision repair
DND132_0282
03420 Nucleotide excision repair
DND132_0282
03430 Mismatch repair
DND132_0282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddn03032
]
DND132_0282
03400 DNA repair and recombination proteins [BR:
ddn03400
]
DND132_0282
Enzymes [BR:
ddn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DND132_0282
DNA replication proteins [BR:
ddn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DND132_0282
DNA repair and recombination proteins [BR:
ddn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DND132_0282
NER (nucleotide excision repair)
GGR (global genome repair) factors
DND132_0282
MMR (mismatch excision repair)
DNA ligase
DND132_0282
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DND132_0282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
Nlig-Ia
HHH_5
BRCT
HHH
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
EGB13499
UniProt:
F0JED6
LinkDB
All DBs
Position
321565..323619
Genome browser
AA seq
684 aa
AA seq
DB search
MVPESVAERVAELRQKIDHHNYRYYVLDDPEISDQEFDVLFRELAALEAEHPELDDPNSP
TRRVGGEPASGFTPYEHALRLYSLDNAMDLDAWYAFHERVAKGVGRADVAYWADPKMDGL
ALEVIYENGRYVRAATRGDGLVGEDVTANMRTVMNLPLSLHGDDVPELLEVRGEVVMANR
DFAALNARQEEKGEKVFANPRNAAAGTIRQLDPKVAASRPLRFMAYGVGRVEWPGRASDW
ATQQALMEGLRDLGFAIPPDVKLCASAKAVADYFQQLGAIRATLPFEIDGMVAKVNDREM
QEALGYTARAPRWALALKFPAHQTRTRLNAIRVQVGRTGVLTPVAELEPVELAGVVVSNA
TLHNKGYIAERDLRVGDTVLIQRAGDVIPQVLSADLEQRPENAEPFVFPMVCPVCESPAV
EDGERVVCTNPACPAKTVQRLIHFVSKAGMDMEGVGKQWVRKLAEDGVLNSAADLFTLKK
TDLLKYGGMGDKSAENFLKAIEKAKAEAPLWRLVAGLGIRHIGEQAARTLAARFKNLDEL
FGATLDDLTGLDGIGDVMAESVLDFRVDAANREMIDRFRELGVWPEGGAPAEEPSDELPL
AGKVFIFTGTLPISRDEAWAMVEARGGIPVKSISKKVDYVVAGEKAGSKIAKAEKLGLEV
IDFDAFKALLEGKTAKRQKSLLDF
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggttcccgaaagcgtcgccgagcgcgtggccgagctgcgccaaaaaatcgatcatcac
aactaccgctactacgtcctggacgaccccgagatctcggaccaggagttcgacgtcctg
ttccgcgagctggccgccctggaggccgaacaccctgagctggacgatcccaactcgccg
accaggcgggtgggcggggaacccgcgtcgggcttcaccccctacgagcacgccctgcgc
ctgtactccctggacaacgccatggacctggacgcctggtacgccttccacgagcgcgtg
gccaagggcgtgggccgggccgacgtggcctactgggccgaccccaagatggacggcctg
gccctggaggtcatctacgagaacgggcgctatgtgcgcgccgccacgcgcggcgacggc
ctggtgggcgaggacgtgaccgccaacatgcgcacggtcatgaacctgcccctgtccctg
cacggggacgacgtgcccgaactcctggaggtgcgcggcgaggtggtcatggccaacagg
gatttcgcggccctgaacgcgcgccaggaggagaagggcgagaaggtcttcgccaacccg
cgcaacgccgcagccgggaccatccgccagctcgatcccaaggtggccgcctcgcgcccc
ctgcgcttcatggcctacggcgtgggccgggtggagtggccgggccgcgcctcggactgg
gccacccagcaggcgctcatggaagggctgcgcgacctcggtttcgccatcccgcccgac
gtgaaattgtgcgcctcggccaaggcggtggccgactattttcagcagctgggggccatc
cgggccacgctgcccttcgagatcgacggcatggtcgccaaggtcaacgaccgcgagatg
caggaggcgctcggctacaccgcccgcgccccgcgctgggccctggccctcaagttcccg
gcccatcagaccaggacccggctcaacgccatccgcgtccaggtggggcgcaccggcgtg
ctcaccccggtggccgagctcgaacccgtggagcttgccggggtggtggtctccaacgcc
accctgcacaacaaggggtacatcgccgagcgcgacctgcgcgtgggcgacaccgtgctc
atccagcgggcgggcgacgtcatcccccaggtcctgtccgccgacctcgaacagcggccc
gagaacgccgagcccttcgtcttccccatggtctgcccggtctgcgaaagcccggccgtg
gaggacggcgagcgggtggtctgcaccaacccggcctgtccggccaagaccgtgcagcgc
ctcatccacttcgtgtccaaggcgggcatggacatggagggcgtgggcaagcagtgggtc
cgcaagttggccgaggatggggtcctgaactccgccgccgacctcttcaccctgaagaag
accgacctgctcaagtacggcggcatgggcgacaagtccgcggaaaactttctcaaggcc
attgaaaaggccaaagcggaggccccgctgtggcggctcgtcgccgggctcggcatccgc
catatcggcgagcaggccgcgcgcaccctggccgcccggttcaagaatctcgacgaactc
ttcggggccaccttggacgacctcaccgggctggacggcatcggcgacgtcatggccgag
tccgtcctggacttccgcgtggacgcggccaaccgcgagatgatcgaccgattccgcgag
ctcggcgtctggcccgagggcggggccccggccgaggagccgtccgacgaactccccctg
gcgggcaaggtcttcatcttcaccggcaccctgcccatctcccgcgacgaggcctgggcc
atggtcgaggcgcgcggcggcatcccggtcaagtccatctccaagaaggtggactacgtg
gtggcgggcgaaaaggccgggtccaagatcgccaaggccgagaagctgggcctggaagtc
attgactttgacgcctttaaggctttactcgaaggcaagaccgcgaaaaggcaaaagtcc
ctgctggacttttaa
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