Delphinus delphis (saddleback dolphin): 132436163
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Entry
132436163 CDS
T11117
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ddp Delphinus delphis (saddleback dolphin)
Brite
KEGG Orthology (KO) [BR:
ddp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ddp03036
]
132436163 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
ddp03400
]
132436163 (SMCHD1)
Chromosome and associated proteins [BR:
ddp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
132436163 (SMCHD1)
DNA repair and recombination proteins [BR:
ddp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
132436163 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_8th
Ig_SMCHD1_7th
Ig_SMCHD1_6th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
DUF4763
Motif
Other DBs
NCBI-GeneID:
132436163
NCBI-ProteinID:
XP_059884726
LinkDB
All DBs
Position
13:complement(34849095..34978022)
Genome browser
AA seq
1997 aa
AA seq
DB search
MAAADDGGPSVGTGEGDGGDGSRTVYLFDRREKESELGDRALQVTERSDFAAFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVSQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGVRRIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLISEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLTHIYHYYIHGPKGNEKR
ASKEVGPFNNIDIEISMFEKGKTPKIINLREIQDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSPNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPIKFSFDLPDPPYRVGVPFNI
PLEFRDEFGHTSQLSTDIQPVFEASGLSLHYEEITNGPNCVIRGVTAKGPVNSCQGKNFS
LKVIFPGLKEDYHSQKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQ
PKLIVHCKFSGAPNLPLYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDTMHNLIFQMYDEGEREIHI
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESSFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSSLGIAGIGLDS
SHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLVDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPALVPQVKISLIKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHIMQVKAIYNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAEIFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPEIQPATPAVS
NVRSVASRTLVKDLYLRITDDYNNHTGIDLVGTVMATIKGSNEEDDTPLFIGKVRTLEFP
FVKGSAEITSLVLAENSPGRDSTEYFIVFEPRLPGLSRILESYILPFMFYNDVKKQQQMA
ALTKEKDQLSKSIIMYRSLFDASKQLLDEMKCQVEEAKLKEAQLRNELKTHNIDIPTTQQ
MPHIEALLKNKMSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISWH
LASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPI
GDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITYCPTLLTRDG
DRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRTAVCRLSSVNK
DLNGQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPMTDCPVPPKR
MRREVTRQNRIITKTDV
NT seq
5994 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggacgacggcgggccctcggtggggaccggagagggcgacggaggcgac
ggctccaggacggtgtacttgtttgaccggcgcgagaaggagtcggagctcggggaccgg
gcgctgcaggtcacggagcgctcggactttgcggcgttccgcgcttcagtgtgtcagaca
cttggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgaaactgttaaagatggagtcactctgtacctgctacagtcagtc
agtcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ttggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttaccattt
gctcttgcagaattaattgataattcattgtctgccacgtctcgtaacactggtgttaga
agaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgaccactacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaggatgttcat
gaacttgtactttctaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agcggatatattagaaacagaaagccgtctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatctcagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggggtacaaccagaacacatacagtacttgaaaaattatttccttctttggacg
agacagttaacgcatatttatcattactatattcatggcccaaaagggaatgaaaaacgt
gcatcaaaggaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaagacacctaagattatcaacctaagggaaatacaagatgacatgcagacgttgtat
ataaatacagcagctgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattatccgatatcacccttttttatatgatagagaaacgtatcctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgactgtttcatacttgagaaa
gcagcaagagggaaaagacctatttttgaatgtttttggaatggacgactaataccatat
acatctgttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccgatt
gagtgctacaataggatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacctttatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgctctatggctg
aaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaaggaataatt
acacgtcctgatcttccttctaaaaagcagggcccctgggcgacttattcagcaatagaa
tgggatggaaaaatatacaaagcaggacaactggtcaagacaatcaagacacttcctctc
ttttatggaagcattgtaaaattttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaggttcaaattgcaatggaacctcaggcactgtatgatgaaataaaaact
gtgccaattgcaaagctggataggacagttgctgagaaagctgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattaggcctgctggaacccccattggtgcattaagaattgaaatattg
aataaaaagggggaagcaatgcaaaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatactacactctccaaatggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattatacattgaaattacaagttgtactgaatgaaagtaatgcagacact
tatgcaggaagaccactaccatctaaagcaattaaattttctgtcaaagagggtaaacca
atcaaattttcatttgatcttccggatcctccttatcgtgttggagtcccattcaatatc
cctctggagtttcgggatgaatttggtcatactagtcaactatcaactgatattcagcca
gtttttgaagcaagtggtttatctttacattatgaagaaataaccaatggcccaaattgt
gtcattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaagaatttttct
ctgaaggttatttttccgggtttaaaagaagactatcacagtcagaaaattagattactg
ccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaatataacagcacaa
ccaaaattgattgttcattgtaagttttcaggtgctccaaaccttccactctatgttgtg
gattgcagtagttctggaaccagtattttgtcaggaccagcaattcaagttcagaatatc
aaaaaagaccagacgcttaaagcaaaaattgaaatacctagttgtaaagatgtggcacct
gtggagaagactattaagttgcttcccagtagccatgttgcaagattacagatattcagt
gtagaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcagga
gatactatgcataaccttatttttcaaatgtatgatgaaggagaaagagaaatccatata
acatcagctttagcagagaaaattaaagttaactggactcctgagattaacaaagagcac
ttactacagggtctgcttcctgatgtacaagtaccaacatctgtaaaagatatgcgctat
tgccaggtttcgttccaagatgatcatgtgtctttggaaagttcatttacagtaagacca
cttcctgatgaacctaaacatctaaaatgtgaattaaaaggaggaaaaactgtgcagatg
ggccaagagcttcaaggagaaatagttataatagttacagatcagtatggaaatcagatt
caagcattttcaccaagttctctatcttccttgggaattgctgggattggacttgatagc
tcacatttgaaaactacttttcaggaaaatacacaaagtataagtgtgagaggcatcaaa
tttattccaggtccccctggaaataaggatctttgttttacgtggcgtgagttttctgac
tttattcgagtgcagctaatttctgggccaccagctaaacttctccttgtagactggcca
gagttaaaggagtccattccagtgattaacggaagagaattacagaatcctctcattgtt
caactttgtgatcagtgggataatccagcacttgtgccacaggttaaaataagccttata
aaagctaacaatttaaagctcactccttcaaaccaacagcataaaaccgatgaaaggggc
agggctaatttgggagtgttcagtgtttatgcccctagaggagaacatattatgcaggtt
aaagccatttataacaagaataccatagaaggacctataattaagttaatgattcttcca
gaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
gggggtattttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aatattaatccagcacgtatttccatgaaaatgtggaaactgtcaaacagtgggaaccga
ccaccagcaaatgcagaaatatttagttgtaataaaataaaggataatgacaaggaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtggggacatattgtatccag
tttggttttatgatggataaagcaaatatccttaacagtgagcagattatagtggatgtt
ctacctaatcaacctgtgaagttagttcctgaaattcagccagctacaccagctgtttca
aatgttcgttcagttgccagtaggaccttggtcaaagatttatatcttcgtatcacggat
gactacaacaatcatactggaattgatttggttggcactgtaatggctaccatcaaaggc
tctaatgaggaagatgacaccccactctttattgggaaagttagaacacttgaatttccc
tttgtgaaaggttcagctgaaatcacgagtctagttctggcagaaaatagtcctggaagg
gatagcactgagtattttattgtgtttgagcctcggctaccaggtttatcaagaatatta
gaatcatatatcctaccatttatgttttacaatgatgttaagaagcagcaacaaatggca
gcacttacaaaagaaaaggaccaattatctaagtctattataatgtatagaagtttattt
gatgccagcaaacagcttcttgatgagatgaagtgccaagttgaagaagcaaaattaaaa
gaggcccagttgcgaaatgaactaaaaacacacaatattgacattcctacaacacaacag
atgccacacattgaagcacttttgaagaataagatgtcagaacaggaagaactaaagaaa
aaacccagaagatcatgtactcttccaaactatactaaaggcagtggagatgttttagga
aagattgcgcacctggcacaaattgaagatgatagagccgcaatggttatttcttggcat
ctggcaagtgacatggactgtgtggtcaccctgaccactgatgctgcacgtcgtatctat
gatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttataagaagactctt
ccagattggaaaagacctctgcctcattaccgaaatggaaaattgtattttaaacccatt
ggagatcctgtctttgcccgagatttgttaacgtttccagataacgtagaacattgtgaa
acagtgtttggtatgctgttaggagacaccattattttggataatttggatgctgctaat
cattatagaaaagaggttgttaaaattacatactgtcctacactgctgaccagagatgga
gatcgcattcgaagtaatggaaagtttgggggccttcagaataaagctcctccaatggat
aaacttcggggaatggtctttggagctccagtaccaaaacagtgcctgatcttaggggaa
caaatagatcttcttcagcagtaccgcactgctgtgtgcaggttgagcagtgtgaacaag
gaccttaacgggcagttggaataccttcacactccggatatgaagaagaaaaaacaggaa
cttgatgaacaagagaagaatctcaaactgatagagcaaaaactaggtatgactcccaca
cgtaagtgtaatgactcactgcgtcatccaatgacagactgtccagttcctcctaagaga
atgagaagagaagttacaagacaaaataggattataaccaaaacagatgtgtga
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integrated database retrieval system
