Dickeya dianthicola: DDI_3556
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Entry
DDI_3556 CDS
T05141
Name
(GenBank) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
ddq
Dickeya dianthicola
Pathway
ddq00300
Lysine biosynthesis
ddq00550
Peptidoglycan biosynthesis
ddq01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ddq00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
DDI_3556
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
DDI_3556
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ddq01011
]
DDI_3556
Enzymes [BR:
ddq01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
DDI_3556
Peptidoglycan biosynthesis and degradation proteins [BR:
ddq01011
]
Precursor biosynthesis
Amino acid ligase
DDI_3556
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
AAA_22
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
ATO34724
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All DBs
Position
complement(3670893..3672362)
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AA seq
489 aa
AA seq
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MRDVLAPWVTDAPDRALREMTLDSRMAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVA
QADDAAPDGTLTEMHGVPVIYLENLNQRLSALAGRFYRQPAASLQLIGVTGTNGKTTTTQ
LLAQWSQALGKTSAVMGTVGNGLLGHVVPSENTTGSAVDVQQILSQLAEQGADFTAMEVS
SHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAEHQAGQKIINADDEV
GRRWLQRLPEAVAVSVAGEIDAGRAHWLKASHIDYHDSGSTVQFDSSWGAGEINSRLMGA
FNVSNLLLALATLLSLGYSLEQLVKAGSALQPVCGRMEVFLASGRPTVVVDYAHTPDALE
KALAAARLHCRGVLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSEDPQAIVT
DILSGLLDAGRAQVIAGRAEAVTSAVMQAGADDVVLVAGKGHEDYQLVGNERLDYSDRIT
VARLLGVIV
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcgatgtcctggctccgtgggtgaccgatgccccggatcgcgcgctgcgggaaatg
acattagacagccgcatggcggctgccggggatctgtttgtggcggtagtcggccacaag
acggatgggcggcactatattccgcaggctattgcgcagggcgtcgcggcggttgtcgca
caggcggatgatgccgcgcccgatggcaccctgactgaaatgcacggcgtgccggtgatt
tatcttgaaaacctgaaccagcgtttatccgcgctggccgggcgtttttatcgccagcca
gcggcctcgttgcaactgatcggcgtcaccggtaccaacggtaagaccaccactacccaa
ttgctggcgcagtggagtcaggcgctgggcaaaaccagcgcggtgatgggcaccgtcggc
aacggcttgctggggcatgtggtgccgtcggaaaacaccaccggttcggcggtggatgta
caacagatcctgagccaactggcggagcaaggggcggatttcaccgcgatggaagtgtct
tcacatgggctggtgcagcaccgggtggaagcgctgtcgttcgccgccgcggtctttacc
aatctgagccgcgatcatcttgattatcacggcgacatggcgaattacgaagcggccaaa
tggcggctgttcgccgagcatcaggccgggcagaaaatcattaacgccgatgacgaggtg
ggccgtcgctggttgcagcgtctgccggaagcggtcgcggtgagcgtggcgggcgagatc
gatgccggccgggcgcactggctgaaagcctcccatatcgattatcacgatagcggctcc
accgtgcaattcgactccagttggggtgccggcgagatcaatagccgcctgatgggcgca
ttcaatgtcagtaacctgttgctggcgctggcgacgctgttgtcgctgggctattcactg
gaacaactggtgaaggccggttctgcgctgcagccggtctgcggtagaatggaagttttt
cttgccagcgggcgaccaacggtggtggtggattatgcccataccccggacgcgctggaa
aaagcgctggcggcggcgcgtttgcactgccggggcgtactgtggtgcgtattcggttgc
ggcggagatcgcgacagaggtaagcgcccgctaatgggggcgattgcggaacaactggcg
gatcgggtgattgttaccgacgataatccacgcagcgaagacccgcaggcgattgtgacc
gatatcctgagcgggttgctggatgccggccgggcgcaagtgatcgccggtcgggcggaa
gccgtcaccagcgcggtgatgcaggctggcgctgatgatgtggtactggtcgccggcaaa
gggcacgaagattatcagttggtaggtaatgaacggttggactattcggaccgtattact
gtcgcacgtttgctgggggttatcgtatga
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