Deinococcus deserti: Deide_12290
Help
Entry
Deide_12290 CDS
T00880
Name
(GenBank) putative DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ddr
Deinococcus deserti
Pathway
ddr03030
DNA replication
ddr03410
Base excision repair
ddr03420
Nucleotide excision repair
ddr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Deide_12290
03410 Base excision repair
Deide_12290
03420 Nucleotide excision repair
Deide_12290
03430 Mismatch repair
Deide_12290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddr03032
]
Deide_12290
03400 DNA repair and recombination proteins [BR:
ddr03400
]
Deide_12290
Enzymes [BR:
ddr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Deide_12290
DNA replication proteins [BR:
ddr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Deide_12290
DNA repair and recombination proteins [BR:
ddr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Deide_12290
NER (nucleotide excision repair)
GGR (global genome repair) factors
Deide_12290
MMR (mismatch excision repair)
DNA ligase
Deide_12290
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Deide_12290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ACO46144
UniProt:
C1CVC7
LinkDB
All DBs
Position
complement(1490778..1492838)
Genome browser
AA seq
686 aa
AA seq
DB search
MDQAASPDDHARYLALRAEVARHNRAYYEQDAPEISDDEYDALARALRDMEARHPEWVED
DSPVQTIGGAPSAAFEPVAHLTPMTSLDNVFDADELREWQEKLARSLNLPPESDDFTFTG
EIKIDGLSVNLYYLDGTLQWAATRGNGRVGEMVTAQVLTIPGIPQHLDGLKGQLEVRGEV
YLSRADFAAFNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRNLKAIFYSLGRRDGVE
ARTQSEVLQWLAGRGFPVSHYSETFRGYVAAADYHRRMTEARSNFEFDADGTVIKLDPLA
LQEEAGFTSRAPRWAIAFKFPVEQVETVLESITVNVGRTGKLAPLAHLAPRLIEGSTVSK
ATLHNEDYIRQMDLRVGDTVVVRKSGGVIPQIMRVVTEKRPEKTTPFVFPTYCPECGHEV
TRAEGDANTYCPNPACPAQRFERIRYFVSRGAMDVRGIGEKLVIQVIETGLVRDAADLYL
LTAEQLAGLERGGEKKAQNVLAQLEASKTRPLWRLINALGMTHVGERNAQALARAFGSLD
ALLRATPEQIEAVPGMGKVTAVSVSAALADPTMRNLIERLRAAGMSPEETQTVRGEQLAG
LNFVITGSLSQPRDELKALLEAAGARVTGSVTRKTSYLIAGQDAGSKLDRARELAVPVLD
EAALGTLLHQRGVQLPGVQASAASTV
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggatcaggccgcctcgcccgatgaccacgcccgttaccttgctttgcgtgccgaggtt
gcccgccacaaccgcgcctattacgaacaggatgcgccagaaatttccgacgacgaatac
gatgccctggcccgcgctctgcgcgacatggaagcccggcaccccgaatgggtcgaggat
gacagcccggttcagaccataggcggggcgccgagtgcggcctttgagcctgtggcgcat
ctcacccccatgaccagcctggataacgtgtttgatgcagacgaactgcgtgagtggcag
gaaaaactggcgcgctccctgaacctgccgccagagtcggatgacttcacctttacaggt
gagatcaagattgatggcctgagcgtcaacctgtactacctggacggcaccctgcagtgg
gcggccacccgtggaaatggccgcgtgggggagatggtaacggcccaggtgctgaccatc
ccagggattccccaacacctcgatggcttgaaaggtcagctcgaagttcgcggcgaggtc
tacctgagccgggcagactttgcagctttcaatgcgcaggctgaggaactgggcacgcct
ctgctcaaaaacccccggaacggtgccgctggggccttgcgccagaaggacccggaagtc
acccgcacccgcaatctgaaggcaattttttatagccttggcagacgcgacggtgtagaa
gcccgcacccagagcgaagttcttcagtggctggcaggccgtggttttccggtcagccat
tacagcgaaacgttccgtgggtatgtcgccgcggctgactaccaccgccggatgaccgag
gcgcggtcgaacttcgagtttgacgccgacggcactgtgatcaagcttgaccctctggca
cttcaggaagaagccgggtttaccagccgcgctccgcgctgggcgattgccttcaaattt
ccggtggaacaggtggaaacggtcctcgaatcaatcaccgtcaacgtgggccgcaccgga
aagctcgcgccgctggctcatcttgccccacgtctgattgaaggcagcaccgtcagtaaa
gccaccctgcacaacgaggactacattcggcagatggacctgcgcgtcggcgacacagtc
gtggtgcgtaagtcgggcggggtcattccgcagattatgcgagtggtgaccgagaagcgt
ccggaaaaaaccacgccattcgtgtttcccacctactgcccggaatgcggccatgaggtc
acccgcgccgaaggggacgccaacacgtattgccccaaccctgcctgccccgcccagcgg
ttcgagcggatccgctatttcgtgtcgcggggtgcgatggatgtccgaggcatcggagaa
aagctggtcatacaggtgatcgagaccggtctggtccgggacgctgcagacctctacctg
ctgaccgctgagcagctcgccggcctggagcgcggaggggaaaagaaggcgcagaatgtc
ctggcccagcttgaagccagtaagacgcgccccctgtggcggctgatcaatgccctgggc
atgacccacgtcggagagcgcaatgcccaggcgctggcccgtgcatttggcagcctcgac
gcgctgctgcgagccacccccgaacagatcgaggctgtcccagggatgggtaaagtgact
gccgtgagcgtcagtgctgcgctggctgaccccaccatgcggaacctgattgagcggctg
cgcgctgctggcatgagtccagaagagacgcagacagttcgcggtgagcagctggctggc
ctgaacttcgtgatcaccgggtcgctgtctcagccgcgagatgaactcaaggctcttctg
gaggctgcaggtgcgcgggttaccggaagcgtgaccaggaaaaccagctaccttatcgcc
gggcaggacgccggtagcaagctcgaccgcgcgcgtgaactggccgtcccggtgcttgat
gaggctgcgctgggcacgctgttgcaccagcgtggcgtgcagcttcctggcgttcaggcg
tccgcagcgtccaccgtctaa
DBGET
integrated database retrieval system
