Desulfovibrio desulfuricans ATCC 27774: Ddes_1425
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Entry
Ddes_1425 CDS
T00837
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dds
Desulfovibrio desulfuricans ATCC 27774
Pathway
dds03030
DNA replication
dds03410
Base excision repair
dds03420
Nucleotide excision repair
dds03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ddes_1425
03410 Base excision repair
Ddes_1425
03420 Nucleotide excision repair
Ddes_1425
03430 Mismatch repair
Ddes_1425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dds03032
]
Ddes_1425
03400 DNA repair and recombination proteins [BR:
dds03400
]
Ddes_1425
Enzymes [BR:
dds01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ddes_1425
DNA replication proteins [BR:
dds03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ddes_1425
DNA repair and recombination proteins [BR:
dds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ddes_1425
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ddes_1425
MMR (mismatch excision repair)
DNA ligase
Ddes_1425
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ddes_1425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
Fur_reg_FbpA
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ACL49327
UniProt:
B8J0Q0
LinkDB
All DBs
Position
complement(1704347..1706485)
Genome browser
AA seq
712 aa
AA seq
DB search
MVQKNEHQGGQSQHSLFAAGPTGEERRRVQWLTAELERHNHLYHTLDRPEISDDQFDALF
RELQDLETRWPELRSLHSPTLRVGGGLLEGLAKKAHSLQMYGLDNVFSAGQWQEFAERMA
RAWGGDVNGPLPESFWCDPKLDGLALEIIYADGVLQEALTRGDGEVGEVVTDAVRTIRTV
PLRLAGPGPFPARLEVRGEVVMYKNDFAVLNEKQEALGLKTFANPRNAAAGTLRQLDTAI
IGSRPLRFLAYSLGQALWTPAPVCLLQSEVMSRLREYGFLTPPDGRLCSSVAEVEEYAQW
VREHRAAFPMEIDGAVAKLDNLEAQQALGFTARAPRFAVAFKFPAELAQTLLKDIEIQVG
RTGVLTPVAMLEPVSVGGVMVSRATLHNEDEIRNRDVRVGDTVMVRRAGDVIPEVVGPVL
EKRPENAREYVFPHTCPACGQPAYREEGEAAWRCENMACSAIRLRAITHFVSKAGLDIAG
VGQKWIEQLVTSGRVQSPADLFTLTVQELLGFERMGEVLAHKFVDALARAVHSATLPRLI
SALGIRHVGEQTARTLALHFETLDELENAGAETLLSLPDVGPEVASSIHNFFNSPANREQ
LERFRALGLWPRGGRSGGGSSGSTGEGGLASGPLAGKNILFTGTLSMPRSEAEKLAETAG
ATPLGGVSKKLDYLVAGEKAGSKLEKAQALGVTVLTEEEFMTMLREAKAASE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggtacagaagaacgaacatcagggcgggcagtcgcagcacagcctttttgccgccggt
cccacgggcgaagaacgccggcgcgtccagtggcttacagccgagcttgagcgtcataat
cacctctaccatacgctggacaggcccgaaatcagtgatgaccagtttgacgccctgttt
cgcgaattgcaggatctggaaacccgctggcctgaacttcgctcgctccattcaccaacc
ttgcgcgtggggggcgggctgctggaaggtcttgccaaaaaggcccacagtcttcagatg
tatggtctggacaacgtattttcagccgggcagtggcaggaattcgcggagcgtatggct
cgcgcctgggggggagatgtgaacggtcccctgccggaaagcttctggtgtgaccccaag
ctggatggcctggctctggagatcatctatgcagacggcgtgttgcaagaagcccttacc
cggggagacggcgaggtgggtgaagttgtcaccgacgctgtgcgtaccatccgcaccgta
cccctgcgacttgcggggccggggccttttcccgccaggcttgaggtgcgcggcgaggtt
gtcatgtataaaaatgattttgccgtccttaatgaaaaacaggaagcccttggtctgaaa
acctttgccaatcccagaaatgctgcggcaggaacactgcgccagctggacactgccatt
atcggttcacgcccgttgcggtttctggcttacagccttggccaggcgctttggacgccc
gcgcccgtctgtctgctgcagtctgaagtcatgagtcggctcagggaatacggttttctt
actccgccggacggcaggctgtgcagcagcgtggccgaggtggaggagtatgcccagtgg
gtcagggagcaccgcgccgcattcccgatggaaattgacggggctgtggccaagctggac
aatcttgaggcccagcaggcgcttggttttaccgcccgggcaccgcgttttgccgtggcc
ttcaagtttccggccgaactggcacagaccctgctgaaagacattgagatacaggtgggc
cgcacgggggtgcttacccctgtggccatgcttgagcctgtctctgtgggcggcgtgatg
gtctcgcgtgccaccctgcataatgaggatgaaatacgcaatcgcgatgtgcgggtgggt
gatacggtcatggtgcgccgcgcaggcgatgtcattcccgaggtggtagggccggtgctg
gaaaagcgcccggaaaacgcccgggaatatgtttttccccacacttgtccggcatgcggc
cagcctgcgtaccgggaagagggggaagctgcctggcggtgcgaaaacatggcctgttcc
gctatccgcctgcgggccatcacgcattttgtgtccaaggccggtctggatatcgcgggc
gtggggcagaaatggatagaacagctggtcaccagtggccgggtgcagtctcctgctgat
ctttttactcttacggtgcaggaactgctgggctttgagcgcatgggagaagtgctggcc
cacaagtttgtggacgcgcttgcccgcgccgtacattctgccaccctgccgcgcctcatc
agcgctctgggtataaggcacgtgggtgaacagaccgcacgcaccctggctttgcatttt
gaaacgctggatgaactggaaaacgccggcgcggaaacgctgctgagtctgccggatgtg
ggaccggaggtggcgtcatccatccataactttttcaacagccccgccaaccgagaacag
cttgagcgcttcagggcgcttggcctgtggccgcgcggcggccggtctggcggcggttct
tccggcagcacaggcgagggcggtttggcgtccgggccgctggcgggaaaaaatattctt
tttaccggaaccctgagcatgccgcgcagtgaagccgaaaagctggctgaaaccgccggt
gccacgccacttggcggggtgagcaaaaaacttgactaccttgtggcgggggaaaaggcg
ggcagcaagcttgaaaaagcacaggcgctgggcgtaacggtactcaccgaagaagaattt
atgaccatgttgcgcgaagccaaagcggcttcggaataa
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