Desulfolithobacter dissulfuricans: GF1_24530
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Entry
GF1_24530 CDS
T08652
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ddu
Desulfolithobacter dissulfuricans
Pathway
ddu03030
DNA replication
ddu03410
Base excision repair
ddu03420
Nucleotide excision repair
ddu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GF1_24530 (ligA)
03410 Base excision repair
GF1_24530 (ligA)
03420 Nucleotide excision repair
GF1_24530 (ligA)
03430 Mismatch repair
GF1_24530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddu03032
]
GF1_24530 (ligA)
03400 DNA repair and recombination proteins [BR:
ddu03400
]
GF1_24530 (ligA)
Enzymes [BR:
ddu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GF1_24530 (ligA)
DNA replication proteins [BR:
ddu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GF1_24530 (ligA)
DNA repair and recombination proteins [BR:
ddu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GF1_24530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GF1_24530 (ligA)
MMR (mismatch excision repair)
DNA ligase
GF1_24530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GF1_24530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
HHH
BRCT
5_3_exonuc
UPF0758_N
zf-ribbon_3
Auto_anti-p27
PTCB-BRCT
zf-tcix
STI1-HOP_DP
Motif
Other DBs
NCBI-ProteinID:
BCO10077
UniProt:
A0A915XKJ3
LinkDB
All DBs
Position
complement(2722177..2724117)
Genome browser
AA seq
646 aa
AA seq
DB search
MDREHARKRLAELREQINYHNYRYYVLDDPVISDGEYDQLFRELLELEERFPDLVTADSP
SQRVGGPPLDRFETVEHPLPMLSLDNVFSEEELREFEEKIRRFLQWEEEIQYSAEPKLDG
LAVELVYEEGVFTIGSTRGDGLVGENITAQLRTVQAIPLRLQELAGDIPSRLIVRGEVYM
PLEGFEALNRERASRGEPLFANPRNAAAGSLRQLDPRVTASRPLSFFVYGVADTAVTPCS
TQQELYRWLARLGFKVNPLVLHCPDIETVVARYRYLQEVRHQLEYEIDGMVVKVDSFELQ
HRLGATSRAPRWAVAWKFPATQATTRIKDVDFQVGRTGAVTPVAILEPVTVGGVTVQRAT
LHNQDEIQRKDLRIGDTVLIQRAGDVIPEVIKPIVEKRTGQEQPILFPKKCPECGHPLVR
PRGEAVIRCINPHCPAQRLRSLIYFAGKNGLDIEGLGKKNMEQLVEAGLVRDLPDIFRLR
VEDLEELDGWGRKSAENVIRAIRAASHPPLDRFLAALGIRFVGEVTAAQLARRFGSLEHL
MEASREELLEVDGVGEQAADSLLDYFSDPDVRAMLRELQENGLQIQPVEAGVPRRLEDRV
FLFTGSLETMSRNEAKARVKELGAQVATTVNRKVTDVVAGPSPAAS
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggaccgggaacatgccagaaaacgtctcgccgaactgcgcgagcagatcaactatcat
aattaccgctactacgtactggatgacccggtcatctcggacggtgagtatgatcagctt
tttcgtgaactgctggagcttgaggagcggtttcctgacctggtcacagcggattcgccc
agtcaacgggtgggtgggccaccgctggaccggttcgagaccgtggagcaccctctgccc
atgctcagcctggacaatgttttttccgaggaggagctgcgggagtttgaggagaagata
cgccggttcctgcaatgggaagaagagatccagtactctgccgagcccaagctggacggg
ctggccgtggagctggtctatgaggagggggtgttcaccatcggttccacccggggagac
gggttggtcggcgagaatatcaccgcccagctgcggacggtccaggccatccccctgcgc
ttgcaggaactggccggagatataccgtcccggctgattgtccggggcgaagtctacatg
cccctggagggcttcgaggccctgaacagggaacgggccagccggggcgagccgctgttc
gccaacccccgtaatgcggcggccggctcgctgcggcagctggatccccgggtcactgct
tcccggccgctttccttttttgtctacggggtggccgataccgccgtcactccgtgctcc
acccagcaggagctctatcggtggctggccaggctcggtttcaaggtcaatccccttgtc
ctccactgcccggacatcgagactgtcgtcgcccgctaccggtatctgcaggaggtccgc
catcagctggagtacgagatcgatggcatggtggtcaaggtggacagctttgagctgcag
caccggctgggtgcaaccagccgggctccccgctgggcagtggcctggaaattcccggcc
acccaggccaccacgagaataaaagatgtggacttccaggttggccggaccggagcggtc
accccggtggctatcctggagccggtcaccgtgggcggagtgactgttcaaagggccacc
ctccataatcaggacgagattcagcgcaaggacctgcgcatcggcgatacggttctgatc
cagcgggccggggatgtcattcccgaggtgatcaagccgatcgtggaaaagcggaccggt
caggagcaacccatcctttttccgaaaaaatgtccagagtgcggccatcccctggtccgt
ccccgcggcgaggcggtcatccgctgcatcaatccgcactgtccggcccagcggctgcgg
agtctgatatattttgccggcaagaacggcctggatatcgaggggctgggcaagaaaaac
atggagcagctggtggaggccggcctggtccgggacctgcctgatatctttcgcctgcgg
gtggaagacctggaggaacttgacggctggggcaggaaatcggctgaaaatgtgattcgc
gccattcgcgccgcctcgcatccgcctctggatcggtttctggcagccctggggattcgc
ttcgtgggcgaagtgactgcggcccagctggcccgtcgttttggctccctggagcacctc
atggaggcctcccgggaggagctgctcgaggtggacggggtgggtgagcaggctgcggac
agcctgctggattatttttccgacccggatgtccgggccatgctgagggaactgcaggaa
aacggtctccagatccagcccgtggaagccggggttcccagacgactggaagaccgtgtc
ttcctgtttaccggttcccttgagaccatgtcccgcaacgaggccaaggcccgggtcaag
gaactcggggcccaggtggccaccaccgtgaaccgcaaggtgaccgatgtggtcgccggg
ccaagcccggcagcaagctga
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