Deefgea piscis: HQN60_14895
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Entry
HQN60_14895 CDS
T06622
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dee
Deefgea piscis
Pathway
dee03030
DNA replication
dee03410
Base excision repair
dee03420
Nucleotide excision repair
dee03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HQN60_14895 (ligA)
03410 Base excision repair
HQN60_14895 (ligA)
03420 Nucleotide excision repair
HQN60_14895 (ligA)
03430 Mismatch repair
HQN60_14895 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dee03032
]
HQN60_14895 (ligA)
03400 DNA repair and recombination proteins [BR:
dee03400
]
HQN60_14895 (ligA)
Enzymes [BR:
dee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HQN60_14895 (ligA)
DNA replication proteins [BR:
dee03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HQN60_14895 (ligA)
DNA repair and recombination proteins [BR:
dee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HQN60_14895 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HQN60_14895 (ligA)
MMR (mismatch excision repair)
DNA ligase
HQN60_14895 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HQN60_14895 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QKJ67904
UniProt:
A0A6M8SUT5
LinkDB
All DBs
Position
complement(3199445..3201859)
Genome browser
AA seq
804 aa
AA seq
DB search
MLETAQRAQQLREELNRYGYEYYVLDQPTVPDAEYDRLFQALQALEVAHPELKTADSPTQ
RVGGAVLPQFLPVTHVVPMLSIRTETDVTAQGALAFDASVRKELDLNASEPAIEYAAELK
FDGLAISLRYEDGVLVQAATRGDGATGEDVTQNIRTIQQIPLRLRASQGTQSLPHWPKVL
EVRGEVYMRRDDFEKLNARQSELGEKTFVNPRNTAAGAVRQLDPKIAAERPLSFYGYGLG
AIEGWDLQPNTHSGVLDALAEFGFPVCDIREVVHGGQGLVAFHQRVAQLRDTLPFDIDGV
VYKVNSLELQRQLGFRTREPRWAVAHKYPAQEALTVVEAIDVQVGRTGALTPVARLAPVF
VGGVTVTNATLHNQDEIDRKDVRLGDTVVVRRAGDVIPEVVSVVIERRPMVEVSGADLFD
TQLAAKYPAYRLPEQCPVCGSHAVREAGEAVTRCTGGLICAAQRKEAVRHFASRRMMDID
GLGERYIDNLVDLGYVTSLADLYRLTLDDFLAMKRRADERDGVTPESVKAGQVTSKWAEN
LLAGIAASKRPPLARFIFALGIRHVGESTAKTLADWLGSLARIRHAPAPLLRVLPDIGST
VAAALAEFLAEPHNQQVIDDFLALGVEPQGEHAPHPALREKLTPAAMLAALEIPKLTAAR
CNALARSLTDLADLHGFSLGRLQDAGLPLDVAQSLMAWLATPAAQVLAQLDALRTELLAA
LPEADAVAQGVLMGKTVVLTGTLPTLSRDEAKAMVEAAGGKVSGSVSKKTDFVVAGEAAG
SKLQKAEELGVTVLSEEDLIQLLG
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaaactgcacagcgcgcccagcaattgcgcgaagaactcaatcggtatgggtat
gagtactatgtgctcgatcagccaacggtgccagacgcagagtacgaccggttgtttcag
gctttgcaagcgctagaagtcgcgcatcccgaattaaaaaccgctgattcgcccacgcag
cgcgtcggtggcgcggtgttgccgcagtttttgccagtgacgcacgtggtgccgatgctg
tcgattcgcaccgaaaccgatgttacggcgcaaggcgcgttggcgtttgacgccagtgtg
cgtaaagaattggatttaaacgccagcgagcccgcgattgaatatgcggccgaattaaag
tttgacggtttggcgattagtttgcgctatgaagacggcgtattggtgcaggcggcaacc
cgtggtgatggtgcaacgggggaagacgtaacgcaaaatattcgcacgattcagcaaatc
ccattgcgtctgcgtgccagccaaggcactcaatctttgccgcactggccaaaagtgctc
gaagtgcgcggtgaagtgtatatgcggcgcgatgattttgaaaaactcaatgcgcgccaa
agcgagttgggcgaaaagacctttgtgaatccgcgcaataccgccgccggtgccgtgcgc
cagttagaccccaaaattgccgccgagcgtccgttatcgttttatgggtatgggctgggc
gcaattgaaggctgggatctgcagcccaatacccatagtggggtactggatgctttggct
gaatttggctttccggtgtgcgatattcgtgaagtggtgcacggcggtcaaggcttggtg
gcgttccatcagcgcgttgcgcagctgcgtgatacgctgccgtttgatatcgacggtgtg
gtttacaaagttaactcattagaactgcagcgccaattgggctttcgcacccgcgagccg
cgttgggcggtggcacataaatatccggcgcaagaagcactcaccgtcgtcgaggcgatt
gatgtgcaagtaggccgtactggcgcgttaacgccggtggcgcgcttggccccggtgttt
gttggtggcgtcactgtcaccaatgccacgctgcataatcaagatgaaatagatcgtaaa
gacgtacgccttggcgataccgttgtcgtgcgccgcgctggggatgtgattcccgaggtg
gtgtcggtggtgatcgagcgccgaccgatggtcgaggtatcgggtgctgatctatttgat
acgcagcttgcagcaaaatacccagcctatcgcttgcccgagcaatgcccggtttgtggc
tcgcacgccgtgcgcgaagctggtgaggcggtcacgcgctgcactggcgggctgatttgt
gctgcgcagcgcaaagaagcggtgcggcattttgcttcgcgccgcatgatggatatcgac
ggccttggcgagcgctatatcgataacttggtggatttgggctatgtcacgagcttagct
gatttgtatcgcttaacgctggacgactttttagcgatgaagcgccgcgctgatgagcgc
gatggcgtaacgccggagagtgttaaagcggggcaagtcaccagtaaatgggccgaaaac
ttattggcaggcatcgcagccagtaagcgcccgccgttggcgcggtttatttttgcgctc
ggcattcgccatgtgggtgagtccaccgccaaaacgctggccgattggttgggcagccta
gcgcgaattcgccacgcccctgcgcctttgctgcgcgtcttgcctgatattggcagcacc
gtcgccgccgctttggccgaatttttggccgagccgcataaccagcaagtgattgatgac
tttttggctttgggtgttgagccgcaaggcgagcatgcgccgcatccggctttgcgcgaa
aaactcacaccagcggcgatgttggcggcattggaaatccctaaattaactgcggcgcgg
tgtaatgcgctggctcgatcgttaaccgatttggctgatttgcatggatttagccttggc
cgcttgcaagatgcgggtttgccgctggatgtagcccagtctttgatggcttggctggca
acgccggcggcgcaggtgttggcgcagctcgatgccctgcgcaccgaattattggcggca
ctgcctgaggcggatgcggtggcgcaaggcgtgttaatgggcaaaacggtcgtgctcacc
ggcacattgccgacattaagtcgcgatgaagccaaggcgatggtcgaagcggctggcggt
aaagtctcgggcagtgtgtcgaaaaaaactgactttgtcgtggcgggcgaggcggcaggc
agcaaattgcaaaaggccgaagaattaggtgtgacggtgttgagcgaggaagatctgatt
cagttattaggctaa
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