Dehalococcoides mccartyi GT: DehalGT_0533
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Entry
DehalGT_0533 CDS
T01182
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
deg
Dehalococcoides mccartyi GT
Pathway
deg03030
DNA replication
deg03410
Base excision repair
deg03420
Nucleotide excision repair
deg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
deg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DehalGT_0533
03410 Base excision repair
DehalGT_0533
03420 Nucleotide excision repair
DehalGT_0533
03430 Mismatch repair
DehalGT_0533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
deg03032
]
DehalGT_0533
03400 DNA repair and recombination proteins [BR:
deg03400
]
DehalGT_0533
Enzymes [BR:
deg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DehalGT_0533
DNA replication proteins [BR:
deg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DehalGT_0533
DNA repair and recombination proteins [BR:
deg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DehalGT_0533
NER (nucleotide excision repair)
GGR (global genome repair) factors
DehalGT_0533
MMR (mismatch excision repair)
DNA ligase
DehalGT_0533
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DehalGT_0533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
HHH
BRCT_2
zf-RRN7
Motif
Other DBs
NCBI-ProteinID:
ADC73900
LinkDB
All DBs
Position
complement(492001..494043)
Genome browser
AA seq
680 aa
AA seq
DB search
MEDMFSPLIEVENLRREINRHNQLYYVQDNPEISDAQYDTLISRLKELEEAHPELVTPDS
PTQKVGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLGNIPFQIDCEPKMDG
LAVALTYRDGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKN
GFAKLNRERADKGLPPFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSH
WQILDYFSKIGFRINPLNRLVNTLEEAKEYYRQMAANRASLPYDADGVVFKVDSVSLQHR
LGDVGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALH
NEDDILRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNPNLNRPACP
VCGGEIYRPAGEAMHYCANVSCPAQFERQLEHFVSRGAMDIRGIGESLSVILAQQGLVKN
VSDLYYLTTADLLQLPRMGEKSADNIIDAIADSKTRPLDRVIFGLGVRHVGNETATLLSR
HYGNIWALAKTGLGELQTIPDIGDKIASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPV
NKNMPFSGMEFVVTGKLESFSREEAQEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKA
RSMGVKELSEREFINMLEQS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggaagatatgttttcccccttgattgaagtagaaaacctaaggcgtgaaataaaccgc
cataaccagctatattacgttcaggataatcctgaaatctctgatgcccagtatgacact
ctaatcagccgcctgaaagaactggaggaagcccaccccgaactggttaccccggactca
cccacccaaaaagtcggggcagagccgcttaaagctttcgggattgtaaaccacccttat
ccgttactttctctggcaaatgctttttcagatacagaactggaagcttggtaccagcgg
gtaaagaaactgctgggcaatattcctttccagatagactgcgagcccaaaatggacggc
ctggcggtagcccttacctaccgggacggaaaatttgcaaccggtgctacccggggtgac
ggatttcagggtgaaaatattacccgaaacctgcggactatccattccataccattaaac
gccgaaccaaacgcaccccctgtttttgaagtaaggggtgaagtatatctttccaaaaat
ggctttgccaaactcaaccgcgaaagggcggataaagggctgcccccttttgccaaccca
cgcaatgccgccgccggttcactccgccagcttgacccgtcagttacggccgaaagaccg
ctggatatatttatttatgctttaggatattcagaagacagcctactgcctgacagccac
tggcaaatactggattatttcagcaaaattggctttaggataaatccacttaaccgcctg
gtaaacaccctggaagaagccaaagaatattaccgccagatggcagcaaaccgggcttca
ctgccttatgacgcagacggagtagttttcaaggtggactccgtctctctgcaacaccgg
ctgggggacgtaggtcgtgaaccccgctgggccatagcctataaattcccggctgaacag
gtcatgacccgcctgaagaaaataggcatatctgtaggccgtacaggtacattaaacccc
tttgccgtacttgagccggtaaatgtgggcggagtagtggtaaaacaggccgccctgcat
aatgaagatgatatactccgcaaagatatccgcgaaggagatacggtcattatccagcgg
gcaggtgaagtaatacctgaggtagttgcaccggtactgagtaaacgcaaccccgaatca
aaacccttcagaatggaagaatctctgtttaacccgaaccttaaccgccctgcctgcccg
gtgtgcggcggggaaatataccgccccgcaggcgaagctatgcactactgtgccaacgtt
tcctgccccgctcagtttgaacgccagcttgaacattttgtttccagaggggctatggat
atacgcggtatcggcgaaagcctaagcgtaatactggcacagcaggggctggtgaaaaac
gtatcggacctgtactacttgaccaccgctgatttactgcaactgccgcgtatgggtgaa
aaaagtgcggataatataatagacgccattgcagacagtaaaacccgcccgctggatagg
gtaatattcggtctgggtgtacgccacgtgggcaacgagaccgccaccctgctctcaaga
cactacgggaatatatgggcactggctaaaaccggtcttggtgaactgcaaactatacct
gatatcggtgacaaaatagccagcagtatcgtagcgtatttcagcgaagaaaaaaatgtg
gctgttatccgccgtctggaagaagcaggcgtacggcttacttcagaccagaaaccggta
aacaaaaatatgccattttccggcatggagtttgtagtcaccggcaagctggaaagtttc
agccgcgaagaagcacaggaaaaaatccgctcactcggcggtacagccaaggataacgtc
accaaagcaaccagctatttggtagtgggtgcagatgccggctccaagctggccaaagcc
cgaagtatgggtgtaaaagagctttccgaacgggaatttataaatatgctggagcaatct
tga
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