Dehalococcoides mccartyi CBDB1: cbdbA577
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Entry
cbdbA577 CDS
T00273
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
deh
Dehalococcoides mccartyi CBDB1
Pathway
deh03030
DNA replication
deh03410
Base excision repair
deh03420
Nucleotide excision repair
deh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
deh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
cbdbA577 (ligA)
03410 Base excision repair
cbdbA577 (ligA)
03420 Nucleotide excision repair
cbdbA577 (ligA)
03430 Mismatch repair
cbdbA577 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
deh03032
]
cbdbA577 (ligA)
03400 DNA repair and recombination proteins [BR:
deh03400
]
cbdbA577 (ligA)
Enzymes [BR:
deh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
cbdbA577 (ligA)
DNA replication proteins [BR:
deh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
cbdbA577 (ligA)
DNA repair and recombination proteins [BR:
deh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
cbdbA577 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
cbdbA577 (ligA)
MMR (mismatch excision repair)
DNA ligase
cbdbA577 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
cbdbA577 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
HHH
BRCT_2
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
CAI82759
UniProt:
Q3ZX08
LinkDB
All DBs
Position
complement(466695..468728)
Genome browser
AA seq
677 aa
AA seq
DB search
MFSPLIEVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHPELVTPDSPTQ
KVGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKKLLGNISFQIDCEPKMDGLAV
ALTYRNGKFATGATRGDGFQGENITRNLRTIHSIPLNAEPNAPPVFEVRGEVYLSKNGFA
KLNRERADKGLPLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQI
LDYFSKIGFRINPLNRLVNTMEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRLGD
VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVVVKQAALHNED
DILRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPFRMEESLFNPNLNRPACPVCG
GEIYRPAGEAMHYCTNVSCPAQFERQLEHFVSRGAMDIRGIGESLSVILAQQGLVKNVSD
LYYLTTADLLQLPRMGEKSADNIIDAIADSKTRPLDRVIFGLGVRHVGNETATLLSRHYG
NIWALAKTGLGELQTIPDIGDKIASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPVNKN
MPFSGMEFVVTGKLESFSREEAQEKIRSLGGTAKDNVTKATSYLVVGADAGSKLAKARSM
GVKELSEREFINMLEQS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgttttcccccttgattgaagtagaaaacctaaggcgtgaaataaaccgccataaccag
ctatattacgttcaggataatcctgaaatctctgatgcccagtatgacactctaatccgc
cgcctgaaagaactggaggaagcccaccccgaactggttaccccggactcacccacccaa
aaagtcggggcagagccgcttaaagctttcgggattgtaaaccacccttatccgttactt
tctctggcaaatgctttttcagatacagaactggaagcttggtaccagcgggtaaagaaa
ctgctgggtaatatttcttttcagatagactgcgagcccaaaatggacggcctggcggta
gcccttacctaccggaacggaaaatttgcaaccggtgctacccggggtgacggatttcag
ggtgaaaatattacccgaaacctgcggactatccattccataccattaaacgccgaacca
aacgcaccccctgtttttgaagtaaggggtgaagtatatctttccaaaaatggcttcgcc
aaactcaaccgcgaaagggcggataaagggctgcctctttttgccaacccacgcaatgcc
gccgccggttcactccgccagcttgacccgtcagttacggccgaaagaccgctggatata
tttatttatgctttaggatattcagaagacagcctgctgcctgacagccactggcaaata
ctggattatttcagcaaaattggctttaggataaatccacttaaccgcttggtaaacacc
atggaagaagccaaagaatattaccgccagatggcagcaaaccgggcttcactgccttat
gaagcagacggagtagttttcaaggtggactccgtctctctgcaacaccggctgggggac
gtaggtcgtgaaccccgctgggccatagcctataaattcccggctgaacaggtcatgacc
cgcctgaagaaaataggcatatctgtaggccgtacaggtacattaaacccctttgccgta
cttgagccggtaaatgtgggcggagtagtggtaaaacaggccgccctgcataatgaagat
gatatactccgcaaagatatccgcgaaggagatacggtcattatccagcgggcaggtgaa
gtaatacctgaggtagttgcaccggtactgagtaaacgcaaccccgaatcaaaacccttc
agaatggaagaatctctgtttaacccgaaccttaaccgccctgcctgcccggtgtgcggc
ggggaaatataccgccccgcaggcgaagctatgcactactgtaccaacgtttcctgcccc
gctcagtttgaacgccagcttgaacattttgtttccagaggggctatggatatacgcggt
atcggcgaaagcctaagcgtaatactggcacagcaggggctggtgaaaaacgtatcggac
ctgtactacttgaccaccgctgatttactgcaactgccgcgtatgggtgaaaaaagtgcg
gataatataatagacgccattgcagacagtaaaacccgcccgctggatagggtaatattc
ggtctgggtgtacgccacgtgggcaacgagaccgccaccctgctctcaagacactacggg
aatatatgggcactggctaaaaccggtcttggtgaactgcaaactatacctgatatcggt
gacaaaatagccagcagtatcgtagcgtatttcagcgaagaaaaaaatgtggctgttatc
cgccgtctggaagaagcaggcgtacggcttacttcagaccagaaaccggtaaacaaaaat
atgccattttccggcatggagtttgtagtcaccggcaagctggaaagtttcagccgcgaa
gaagcacaggaaaaaatccgctcactcggcggtacagccaaggataacgtcaccaaagca
accagctatttggtagtgggtgcagatgccggctccaagctggccaaagcccgaagtatg
ggtgtaaaagagctttccgaacgggaatttataaatatgctggagcaatcttga
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