Dehalobacter sp. CP: AAH944_04265
Help
Entry
AAH944_04265 CDS
T11158
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
deha Dehalobacter sp. CP
Pathway
deha03030
DNA replication
deha03410
Base excision repair
deha03420
Nucleotide excision repair
deha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
deha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AAH944_04265 (ligA)
03410 Base excision repair
AAH944_04265 (ligA)
03420 Nucleotide excision repair
AAH944_04265 (ligA)
03430 Mismatch repair
AAH944_04265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
deha03032
]
AAH944_04265 (ligA)
03400 DNA repair and recombination proteins [BR:
deha03400
]
AAH944_04265 (ligA)
Enzymes [BR:
deha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AAH944_04265 (ligA)
DNA replication proteins [BR:
deha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AAH944_04265 (ligA)
DNA repair and recombination proteins [BR:
deha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AAH944_04265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AAH944_04265 (ligA)
MMR (mismatch excision repair)
DNA ligase
AAH944_04265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AAH944_04265 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Nlig-Ia
HHH
Mustang
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
XOF54478
LinkDB
All DBs
Position
846906..848906
Genome browser
AA seq
666 aa
AA seq
DB search
MDQNNRLVELKNMIEKANYHYYGLDDPIFTDAEYDLYLRELIEIEHQHPDWVTLDSPSQR
VGGFIASQFPKVRHPEPMLSLDNAFNAEELMDFDRRVRSMAPDAEYVVELKIDGLTVALT
YQEGILQRGATRGDGEVGEEITANVRTIRAVPLRLYNADDRKFEGSVDVRGEGYMPKESF
LQLNTEREEEGLSLFANPRNAAAGSLRQQDSRITAQRKLGYFAYQLIQAEQMGISTQTGV
LEALSRFGFNVNPNYQLFSTMEQVIAYCSRMTDERHGFPYEIDGLVIKVNSFSQQRELGY
TAKSPRWATAYKFPAEQVETQVKDIEINVGRTGVLTPTAVLNDVFVAGSTVGRATLHNLD
NIRDKDIRIGDYVLIHKAGDVIPEIIKSLPGKRTGQEIVFEMPANCPSCGSPVYRLEGEA
AHRCQNISCPSRQREALIHFVSRDAMNIEGLGPAVVSQLLDAGLVKDASDLYYLQYEDLV
QLDRMADKSARNLLASIKKSTERGLASLIFAMGIRHVGVKVGKILAARYRSMEALENATE
EELREIGDIGGIMAKSIVGFFSAPANREFLNRLKAAGVTMTAANTSVFQILAGKSIVVTG
ALRSWERREIEDLIEQLGGKASSSVSKKTSLVLVGENPGSKYNKARELGIPVYTEDEFKA
LINAEE
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaataaccgtttggtcgaactcaagaatatgatcgaaaaggccaattatcat
tattacggcttggatgaccccatttttacggatgccgaatatgacctttacttaagggaa
ctcattgagatcgaacatcaacacccggactgggtcacacttgattctccttcccagcgg
gtcgggggttttatcgcatcccagtttccaaaggtccgacacccggaaccgatgctgagt
ctcgataacgctttcaatgctgaggaattgatggactttgaccgtcgggtgcgcagtatg
gcacccgatgcggaatatgtcgtagaattgaagatcgacgggctgacggtagccttaact
taccaggaaggtattttgcagcggggggcaacccgcggtgacggtgaagtaggggaagag
atcacagcaaatgtccggaccattagagcggtgccgcttcggctgtataacgcagatgac
aggaaattcgaaggttctgtggatgtccgtggcgaaggatatatgccgaaggagtccttc
ctccagctgaatacggagcgggaagaagagggactttccctgtttgcgaacccgagaaat
gcggcagccggttctctgcgtcagcaggattccaggatcacggctcagcggaaactggga
tattttgcgtatcagctgattcaggccgaacaaatggggatcagcacccagaccggagtg
ctggaagccttgagcaggttcggatttaatgtcaatccgaactatcagctgttttcaacc
atggagcaagtgattgcatattgcagccggatgacggacgaacggcacggtttcccttat
gaaatcgatggcttggtcattaaggtgaacagcttttctcagcagcgcgagctaggctat
acggccaaaagcccgcgctgggcgactgcttataaattcccggccgaacaggtcgagacc
caggtgaaggatattgagatcaatgtgggccggacgggagtgctcaccccgactgcggtt
cttaacgacgtatttgtagccggttctaccgtggggagggccacactgcataatctggac
aatatccgggacaaggacatccggatcggcgattacgtattaattcataaggccggagat
gtgattcctgaaatcatcaaatcgctacccggaaaacgcaccggccaggaaattgtgttt
gaaatgcctgccaactgcccgtcctgcggcagtccagtttaccggctggaaggagaggcc
gcccaccgctgtcagaatatctcctgcccgtcgcgccagagagaagccctgatccatttt
gtttccagggacgcgatgaatattgaaggtctcgggcccgctgtggtcagccagctgctg
gatgcagggcttgtcaaagacgcctccgatttatattatcttcagtacgaagaccttgtt
caattagaccggatggctgataaatcagcccgcaacctgcttgcttcgatcaaaaaaagc
acagagcgcggcctggcttcactgatttttgcgatgggtatccggcatgtcggggtcaaa
gtcggcaagatcctggccgcaaggtaccgaagcatggaagctctggaaaatgcgaccgag
gaagaactccgggaaatcggcgatatcggtggcatcatggccaaaagtattgtgggtttc
ttcagtgcccctgcgaaccgcgaattcctgaaccggctgaaggcggccggtgtcaccatg
accgcagcgaatacgtctgttttccagatccttgcagggaagagcattgtggtgactgga
gcacttcgatcgtgggaacggcgcgaaatcgaggatctgattgaacagctcggcggtaag
gcctcatcaagtgtaagcaaaaaaacatccctggttctcgtcggtgagaaccccggttca
aagtataataaagccagggaactcggaatcccggtctataccgaagatgaatttaaggcg
ctgattaatgccgaagaataa
DBGET
integrated database retrieval system
