Deinococcus sp. D7000: HLB42_04700
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Entry
HLB42_04700 CDS
T10857
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
deid Deinococcus sp. D7000
Pathway
deid03030
DNA replication
deid03410
Base excision repair
deid03420
Nucleotide excision repair
deid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
deid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HLB42_04700 (ligA)
03410 Base excision repair
HLB42_04700 (ligA)
03420 Nucleotide excision repair
HLB42_04700 (ligA)
03430 Mismatch repair
HLB42_04700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
deid03032
]
HLB42_04700 (ligA)
03400 DNA repair and recombination proteins [BR:
deid03400
]
HLB42_04700 (ligA)
Enzymes [BR:
deid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HLB42_04700 (ligA)
DNA replication proteins [BR:
deid03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HLB42_04700 (ligA)
DNA repair and recombination proteins [BR:
deid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HLB42_04700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HLB42_04700 (ligA)
MMR (mismatch excision repair)
DNA ligase
HLB42_04700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HLB42_04700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Zn_Ribbon_TF
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QLG10144
LinkDB
All DBs
Position
957337..959412
Genome browser
AA seq
691 aa
AA seq
DB search
MDQAELTPGEYEQYLSLSAAVARHNRAYHEEDAPTIPDSEYDALVRRLRALEAQHPEWAE
QAAQAVGADTSPAQAVGGAPSTAFQPVNHPTPMTSLDNVFSDAELGEWREKLARALNLPP
EHDDFVFTGELKIDGLSVNLYYVNGQLQWAATRGNGSVGEIVTAQVATVPGIPTALDGLS
GELEVRGEVYMSRADFAAYNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRNLKAIFY
ALGKRDGVPATTQGEVLAWLAAQGFPISTHSEGLSGIAAAADYHARMTAGRQDFEFDADG
TVFKVDSLRLQEEAGFTSRAPRWAIAYKFPVEEVETVLEGITVNVGRTGKLTPLAHLSPR
LIEGSTVSKATLHNQDFVRDLDLHIGDTVVVRKSGGVIPQIMRVIVDKRPADAQPFVFPD
TCPECGQPVTRDPEDANTYCTNPACPAQTYKLVEYFVSRGAMDIAGVGGKLIAQLLTLGL
IHDAADLYALNAETLAGLERGGEKKAANILAELEASKTRPLWRLINALGLDHVGERNAQA
LARAFGTLDALMAATPEQIEAVPGLGKVIGASVAVALKEEGYVTLLNKLKAAGVNPQEEE
VRRGEQLGGLNFVITGSLGRPRDAIKAELEAAGGRVTGSVTGKTSYLIAGEDAGSKLTRA
QELGVAVLDEAGLAALLAERGVENGETSAQT
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggatcaggccgagttgacccccggtgaatacgagcagtacctcagtctcagcgccgcc
gtggcccgccacaaccgcgcgtaccacgaggaggacgcgcccacgattcccgacagcgag
tacgacgcgctggttcggcgcctgcgtgccctggaagcccagcatcccgaatgggccgag
caggccgcgcaggcggtaggggccgacaccagccccgcgcaggcggtggggggggcgccc
agcaccgccttccagccggtgaaccaccccacccccatgaccagcctggacaacgtcttc
agcgacgccgaactgggcgagtggcgcgagaagctggcccgcgcgctgaatctgcccccc
gagcacgacgacttcgtgttcacgggcgagctgaagatcgacggcctgagcgtgaacctg
tactacgtgaacggtcagttgcagtgggccgccacgcgcggcaacggctccgtcggcgag
atcgtgaccgcgcaggtggcgacggtgccgggcattcccactgcgttggatggcctgagc
ggtgaactagaggtgcgcggcgaggtctacatgagccgcgcggacttcgccgcctacaac
gcgcaggccgaggaactgggcacgccgctgctcaagaacccccgcaacggcgcggcggga
gcgctgcggcagaaagacccggaggtcacgcgcacccgcaacctcaaggccattttctac
gcgctgggcaagcgcgacggcgtgcccgccactacccagggcgaggtgctggcgtggctg
gccgcccagggctttccgatcagcacccacagcgaggggctgagcggcatcgccgccgcc
gccgactaccacgcccgaatgactgccggacgtcaggacttcgaattcgatgccgatggc
acagtgttcaaggtcgattcgctgcgcctgcaggaggaggcgggctttaccagccgcgcc
ccgcgctgggccattgcctacaagttcccggtggaggaggtggagaccgtgctggagggc
attacggtcaacgtgggccgcaccggcaagctgaccccgctggcccacctgtcgccgcgc
ctgatcgagggcagcacggtcagcaaggccacgctgcacaaccaggatttcgtgcgggat
ctggatcttcacattggggacacggtggtggtgcgcaaatccggcggcgtgattccgcag
atcatgcgtgtgatcgtggacaaacgcccggcagatgcccagcccttcgtctttcccgac
acctgccccgagtgcggccagccggtcacgcgcgatcccgaggacgccaacacctactgc
accaatccggcctgcccggcgcagacctacaagctggtggagtatttcgtgtcgcgcggc
gccatggacatcgcgggcgtggggggcaagctgatcgcgcaactgctgacgctgggcctg
atccacgacgcggcagacctgtacgccctgaacgccgagacgctggccgggctggagcgc
ggcggcgagaagaaggccgccaacatcctggccgagctggaggccagcaagacccgcccg
ctgtggcgcctgatcaacgcgctgggcctggatcacgtgggcgagcgcaacgcccaggcg
ctggcccgcgccttcggcacgctggacgcgctgatggcggccactcccgagcagatcgag
gccgtgccggggctgggcaaggtgatcggcgcaagtgtggcggtggccctgaaagaagag
ggctacgtcaccctcctgaacaaactcaaggcggcgggcgtcaacccgcaagaagaggag
gtgcggcgcggagagcagctggggggcctgaacttcgtcatcaccggcagcctgggccgc
ccgcgcgacgccatcaaggcggaactagaggccgctggaggccgcgtgaccggcagcgtc
accggcaagacctcgtacctgatcgctggggaggacgccggcagcaagctgacccgcgcg
caggagctgggcgtggccgtgctggacgaggccggactggcggcgctgctggcggaaagg
ggcgtagaaaacggggaaacgtccgcccagacctga
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