KEGG   Pseudodesulfovibrio indicus: AWY79_13005
Entry
AWY79_13005       CDS       T04404                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
dej  Pseudodesulfovibrio indicus
Pathway
dej03030  DNA replication
dej03410  Base excision repair
dej03420  Nucleotide excision repair
dej03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dej00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AWY79_13005
   03410 Base excision repair
    AWY79_13005
   03420 Nucleotide excision repair
    AWY79_13005
   03430 Mismatch repair
    AWY79_13005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dej03032]
    AWY79_13005
   03400 DNA repair and recombination proteins [BR:dej03400]
    AWY79_13005
Enzymes [BR:dej01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AWY79_13005
DNA replication proteins [BR:dej03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AWY79_13005
DNA repair and recombination proteins [BR:dej03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AWY79_13005
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AWY79_13005
   MMR (mismatch excision repair)
    DNA ligase
     AWY79_13005
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AWY79_13005
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT Nlig-Ia HHH PTCB-BRCT BRCT_2 DNA_ligase_ZBD DZR_2
Other DBs
NCBI-ProteinID: AMK11963
UniProt: A0A126QPI5
LinkDB
Position
complement(2857201..2859255)
AA seq 684 aa
MVPLSVKERAALLREKIEYHNHRYYVLDDPEISDAEYDVLFRELAALEAEHPELDDPNSP
TRRVGGEPAAGFATYEHALRMYSLDNGMNVDEWRAFAERVAKGLGTGDVAYWTDPKMDGL
ALEVIYENGRFVRAATRGDGMVGEDVTHNMRTVMNLPLTLRGGTVPQLLEVRGEVVMANK
DFAALNERQREKGEKVFANPRNAAAGSIRQLDPKVAASRPLRFLAYGVGRVQWADQAENW
PTQQRLMEGLRTLGFAIPPEVRLCQSAAEVADYFLELMERRATLPFEIDGVVAKVNDREM
QDALGYTSRAPRWALALKFPAHQTKTRLHDIRIQVGRTGVLTPVAELDPVELAGVVVSNA
TLHNKGYIAERDFRIGDTVLIQRAGDVIPQVLSVDLEQRPADAAPFVFPMTCPVCESPAV
EDGERVVCTNPACPAKTVQRLIHFVSKAGLDMEGVGKQWVRKLAEDGVLNTPADLFTLDK
TDLLKYERMGDKSAENFVKAIRKAKETAPLWRLVAGLGIRHIGEQAARALAARFEDLDAL
FAATIEDLTALDGIGGIMAESVLDFKVDEGNRAMVEKFKNVGLWPKGGSPEAQPSGDAPL
AGKTFLFTGTLPVKRDEAHAMVEANGGMPVKTISKKVDYLVAGEKAGSKVAKAQTLGVEV
IDYDGFLALLQGKTETKPKSLLDF
NT seq 2055 nt   +upstreamnt  +downstreamnt
atggtccccttgagcgtcaaagaacgcgcggcattgctgcgcgaaaaaatcgagtatcac
aaccaccgttactacgtcctggacgatccggagatttcggacgccgagtacgacgtcctg
ttccgcgagctggcggccctggaggccgagcacccggagctggacgaccccaactcgccc
accaggcgggtgggcggcgagcccgccgccgggttcgccacctacgagcacgccctgcgc
atgtactccctggacaacggcatgaacgtggacgagtggcgcgcctttgccgaaagggtg
gccaaggggctcggcaccggcgacgtcgcctactggaccgaccccaagatggacgggctg
gccctggaggtcatctacgagaacgggcggttcgtgcgcgcggccacgcgcggcgacggc
atggtcggcgaggacgtgacccacaacatgcgcacggtcatgaacctgcccctgaccctg
cgcggcgggaccgttccgcagctcctggaggtgcgcggcgaggtggtcatggccaacaag
gatttcgcggccctcaacgagcgtcagcgggagaagggcgagaaggtcttcgccaatccg
cgcaacgccgcggccgggtccatccgccagctcgaccccaaggtggccgcctcgcgcccc
ctgcggttcctggcctacggggtggggagggtgcaatgggccgaccaggccgagaactgg
cccacccagcaacggctcatggaagggctgcgcacgctcggcttcgccattccgcccgag
gtccggctctgccaatccgccgccgaggtagccgactatttcctggaactgatggaacgc
cgcgccacgctgcccttcgagatcgacggggtggtggccaaggtcaacgaccgcgagatg
caggacgcgctgggctacacctcccgggcgccgcgctgggctctggcgctcaagttcccg
gcccaccagaccaagacccggctgcacgacatccgcatccaggtgggacgcaccggcgtg
ctcaccccggtggccgagctggacccggttgagctggccggggtggtcgtctccaacgcc
acgctgcacaacaaggggtacatcgccgagcgcgacttccgcatcggggacacggtcctc
atccagcgcgcgggcgacgtcatcccccaggtgctgtccgtggacctggagcagcgtccg
gcagacgccgcgccctttgtctttcccatgacctgcccggtctgcgaaagcccggccgtg
gaggacggggagcgggtggtctgcaccaacccggcctgtccggccaagaccgtgcagcgg
ctcatccacttcgtgtccaaggcggggctggacatggagggcgtgggcaagcagtgggtc
cgcaagctggccgaggacggggtcctgaacactccggcggacctcttcaccctggacaag
accgacctgctcaaatacgagcgcatgggtgacaagtccgcggaaaacttcgtcaaggca
atcaggaaagccaaggagacggccccgctgtggcggctcgtcgccggactcggcatccgc
cacatcggcgagcaggccgcgcgcgccctggccgcccggttcgaggacctggacgcgctc
ttcgccgcgaccatcgaggacctgaccgccctggacggcatcggcgggatcatggccgag
tcggtcctggacttcaaagtggatgagggcaatcgggccatggtcgagaaattcaagaac
gtcggcctctggcccaagggcggatcgccggaagcacaaccctccggggacgcgccgctg
gccggaaagacattcctgttcaccgggaccctgcccgtgaagcgggacgaggcccatgcc
atggtcgaggccaacggcggcatgccggtcaagaccatctccaaaaaggtggattacctg
gtggccggggaaaaggccgggtccaaggtggccaaggcccaaaccctcggagtggaagtc
attgactacgacgggttcctggcattactccagggcaagaccgagacaaagccgaagtcc
ctgctggacttctag

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