KEGG   Delftia sp. Cs1-4: DelCs14_3207
Entry
DelCs14_3207      CDS       T01497                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
del  Delftia sp. Cs1-4
Pathway
del03030  DNA replication
del03410  Base excision repair
del03420  Nucleotide excision repair
del03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:del00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DelCs14_3207
   03410 Base excision repair
    DelCs14_3207
   03420 Nucleotide excision repair
    DelCs14_3207
   03430 Mismatch repair
    DelCs14_3207
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:del03032]
    DelCs14_3207
   03400 DNA repair and recombination proteins [BR:del03400]
    DelCs14_3207
Enzymes [BR:del01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DelCs14_3207
DNA replication proteins [BR:del03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DelCs14_3207
DNA repair and recombination proteins [BR:del03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DelCs14_3207
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DelCs14_3207
   MMR (mismatch excision repair)
    DNA ligase
     DelCs14_3207
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DelCs14_3207
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase Nlig-Ia HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 5_3_exonuc
Other DBs
NCBI-ProteinID: AEF90208
LinkDB
Position
complement(3628265..3630376)
AA seq 703 aa
MNDNLDLFSGAAPAAPESGAAPDKVLAKVQALRAQLNQWAHEYYVLDTPTVPDGEYDRVF
QQLQALEGAYPELVTPDSPTQRVIGAVLDGLMPVRHAVPMLSIRTETDNEATGAEAFDAR
IRKELELAEGAPPVEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRK
IPLSLPEGKGVPPVVEVRGEVYMGRADFVKLNERQQAAGGKSFANPRNAAAGSVRQLDSG
IAAQRPLSFFAYGLGEITPAAQGGPDFVTHYAMLQTLRDWGFPVAPQVCIAKGAAELVAF
HQRMGAERATLPYEIDGVVYKVNSLAQQRQLGFVSREPRWAVAHKYPAEEMPTRMEGIDI
QVGRTGKLTPVARLAPVAVGGVIVTNATLHNLFEIRKKRVRTGDTVVVRRAGDVIPEVVG
RVPGDRPAYVPNFRMPAACPICGSAVSRPKGEANHRCTGGLFCPAQRKEAILHFAARRAM
DIEGLGDKLVDQLVDGHVVRTLPDLYRLGLVALASLDRMAEKSAQNVLDALEKSKKTTLS
RFLFGLGIRQVGESTAKDLARHFGQLDAIMDASVEQLLQVRDVGPIVAESIHTFFAQPHN
REVVEQLRACGVHWEEGAAREQTAQPLAGMTVVLTGTLPTLGRDQAKEMLEAAGAKVSGS
VSKKTSYVVAGAEAGSKLAKAEELGVTVLDEAGMLALLAGGDR
NT seq 2112 nt   +upstreamnt  +downstreamnt
atgaatgacaatctggatcttttctccggcgcagcccctgcggcgccggagtccggggcc
gcccccgacaaggtgctggccaaggtgcaggcgctgcgcgcccagctcaaccaatgggcg
catgagtactacgtgctggacacgcccaccgtgcccgacggcgagtacgaccgcgtcttc
cagcaacttcaggcgctggaaggtgcctaccccgaactggtcacgccggactcgcccacg
cagcgcgtgatcggcgccgtgctcgacggcctgatgcccgtgcgccatgccgtgcccatg
ctcagcatccgcaccgagaccgacaacgaggccacgggtgccgaggccttcgacgcacgc
atccgcaaggagctggaactggccgaaggcgcgccgcccgtggagtatgtggccgagccc
aagttcgacggcctggccatgaacctgcgctacgagaacggccgcctggtgcaggccacc
acgcgcggcgacggcgaggtgggcgaggacgtcacccacaacatccgcaccatccgcaag
attccgctgtccctgcccgaaggcaagggcgtgccgcccgtggtcgaggtgcgcggcgag
gtctacatgggccgcgccgacttcgtcaagctcaatgagcgccagcaggccgccggcggc
aagagctttgccaatccgcgcaatgctgcggcaggctcggtgcgccagctggactcgggc
attgcggcgcagcgcccgctgtccttcttcgcctatggcctgggcgagatcacgccggct
gcccagggcggccccgacttcgtcacccactacgccatgctgcagacgctgcgcgactgg
ggctttccggtggcgccccaggtctgcatcgccaagggcgcggccgagctggtggccttc
caccagcgcatgggcgccgagcgcgccacgctgccctacgagatcgacggcgtggtctac
aaggtcaacagcctggcccagcagcgccagctgggctttgtctcgcgcgagccgcgctgg
gccgtggcccacaagtacccggccgaggaaatgcccacgcgcatggaaggcatcgacata
caggtcggccgcacgggcaagctcacgccggtggcgcgcctggcccccgtggcggtgggc
ggcgtcatcgtcaccaatgccacgctgcacaacctgttcgagatccgcaagaagcgcgtg
cgcacgggcgacaccgtggtcgtgcgccgcgccggtgacgtgatccccgaggtcgtgggc
cgcgtgcccggcgaccggccggcctatgtgcccaacttccgcatgcccgctgcatgcccc
atctgcggcagcgcggtgtcgcgccccaagggcgaggccaaccaccgctgcacgggcggc
ctgttctgccctgcgcagcgcaaggaggccatcctgcactttgccgcgcggcgcgccatg
gacatcgagggcctgggcgacaagctcgtggaccaactggtggacggccacgtggtgcgc
acgctgcccgatctctaccgcctgggcctggtggccctggcatcgctggaccgcatggcc
gagaagtcggcccagaacgtgctggacgcgctggaaaaatccaagaagaccacgctgtcg
cggttcctcttcggcctgggcatccgccaggtgggcgagtccacggccaaggacctggcc
cgccacttcggccagctggacgccatcatggacgccagcgtcgagcaactgctgcaggtg
cgcgacgtggggcccatcgtggccgagagcatccacaccttcttcgcccagccccacaac
cgcgaggtggtcgaacagttgcgtgcctgcggcgtgcactgggaggagggcgcggcgcgc
gagcagaccgcccagccgctggccggcatgaccgtggtgctcacgggcacgctgcccacc
ctgggccgcgaccaggccaaggagatgctggaggccgcgggcgccaaggtctccggctcg
gtcagcaagaagaccagctatgtggtggccggtgccgaggccggcagcaagctggccaag
gccgaggaactgggcgtgaccgtgctggacgaggccggcatgctggcgctgctggcaggc
ggggaccgctga

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