Desulfitobacterium elongatum: DESULF6_33320
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Entry
DESULF6_33320 CDS
T11905
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
delo Desulfitobacterium elongatum
Pathway
delo03030
DNA replication
delo03410
Base excision repair
delo03420
Nucleotide excision repair
delo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
delo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DESULF6_33320 (ligA)
03410 Base excision repair
DESULF6_33320 (ligA)
03420 Nucleotide excision repair
DESULF6_33320 (ligA)
03430 Mismatch repair
DESULF6_33320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
delo03032
]
DESULF6_33320 (ligA)
03400 DNA repair and recombination proteins [BR:
delo03400
]
DESULF6_33320 (ligA)
Enzymes [BR:
delo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DESULF6_33320 (ligA)
DNA replication proteins [BR:
delo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DESULF6_33320 (ligA)
DNA repair and recombination proteins [BR:
delo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DESULF6_33320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DESULF6_33320 (ligA)
MMR (mismatch excision repair)
DNA ligase
DESULF6_33320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DESULF6_33320 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
BFU39993
LinkDB
All DBs
Position
complement(3572673..3574658)
Genome browser
AA seq
661 aa
AA seq
DB search
MSEESKRLEELKRQIEEANYQYYGLDQPTLTDAEYDALLQELIRLEKEHPEWLTPDSPSQ
RVGGYIAKEFPKVRHAEALLSLDNAFNAGDLTEFDRRVRSTVTQVEYVVELKIDGLTVAL
TYEDGMLVRGATRGDGEVGEEITANVKTISSIPLRVRQEVSRLDVRGEGYMPKESFLRLN
QDREESGQPMFANPRNAAAGSLRQLDSRVTAQRRLGYFAYQVLTPEGVDLSSQTRVLDYL
KGQGFSVNPEYKVFSQIEEVIAYCTEMAEKRHSFPYDIDGLVIKVNDIAQQRELGFTAKS
PRWAIAYKFPAEQVETIVEDIVIRVGRTGVLTPTADLKPVFVAGSTVSRATLHNSDNIRD
KDIRIGDHVLIQKAGDVIPEVVKSLPERRTGDERIFEMPAFCPECQSPVSREEGEAAHRC
TSISCPAQQREAIIHFVSRDAMNIDGLGPAVIQQLLEVGLIRDAADLYSLQYEALLQLER
MGKKSAENLLKAIEESKKRGLASLIFGLGIRHVGEKAGKILAQRFGTMDNLEQSQLEELQ
GISDIGPAMAQSIVQFFSQESTRDFLRKLRQAGVDMNAQTSLRSQIFAGKSIVVTGTLER
WDRQYVENLIEEHGGKAASSVSKKTAFVVAGEKAGSKLTKAKELGVPVLTEAEFAELLSD
E
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagaatccaagcgcctagaagaattaaaacgtcaaatagaggaagcaaactac
caatattacggcttagaccaaccgaccttgaccgatgcagaatatgatgcccttttgcag
gaattaattcgactcgaaaaagaacatccggagtggctcactccagattctccttctcag
cgggtcggtggctatatcgctaaggagtttccgaaagtacggcatgccgaggctcttttg
agcttggataatgcgttcaatgctggggacttaacagaatttgatcgtagggtccgttcg
accgtgactcaggtagagtatgtggtggagcttaaaattgatgggttgaccgtggcatta
acctatgaagatggaatgctcgtccgtggcgcaacccgtggagatggggaagtaggagag
gaaattacggccaatgttaaaacaatttcttcgattcccttacgggttcgccaagaggtt
tctcgacttgatgttcgcggcgaaggatatatgccgaaggagtcttttctgcgtttgaac
caagatagagaagaaagcgggcagcccatgtttgcaaatccacgcaatgcagcggcggga
tctttgcggcaactcgattcccgagttacggctcagcgtcgattaggatattttgcgtat
caggtgctaacccctgaaggggtggatctgtcctcacaaacgagggtactcgattatctc
aaggggcaagggttttcggtaaatcctgagtataaagtattttcacagatcgaagaggtc
atcgcctattgcacggaaatggcagaaaaacggcatagctttccgtatgacatcgatgga
ctggtgattaaggtcaatgatattgctcaacagcgggaacttggctttacagcaaagagt
cctcgctgggcaattgcttataagtttcctgcggaacaggtggaaaccatagtagaagat
attgttatacgggtcgggagaaccggagtgctgactccgacggcagacttgaagcccgta
tttgttgcagggtcgacggtgagtcgtgcaacgttacataactcggataatattcgggat
aaggatattcgaatcggggatcatgttctcatccaaaaggcaggggatgtcattccggaa
gtcgtcaagtccttgccagagaggcgaacaggggatgaacggatttttgagatgccggcc
ttctgtccggaatgtcaaagccctgtgagtcgtgaggagggagaggcagcccatcgttgt
acaagtatctcctgtcctgcgcagcaaagggaggccatcatccattttgtttctcgagat
gcgatgaatattgatggtctcggaccagccgtgattcaacagcttcttgaggtaggcttg
attcgtgatgcagcagatttatattcgttacagtatgaggcgctccttcaattagagcgg
atggggaagaagtccgccgagaatttactgaaggcgatcgaggaaagtaaaaagcggggg
ctggcctctttaatttttgggttgggaattcggcacgtcggggagaaagcgggcaagatt
cttgcacagagatttggtacaatggacaatttagagcagtctcagcttgaagagttgcag
ggaatttcagacattggacccgccatggcgcagagtatcgttcagtttttcagccaggaa
agtacccgagactttttaaggaaattacggcaggctggagtggatatgaacgctcagacc
tccttacgctcgcaaattttcgcggggaaaagtattgtagtgacgggaaccctggaacga
tgggatcgtcaatatgttgagaatctaatcgaggagcatgggggaaaagcagcaagcagt
gtcagcaaaaaaaccgcctttgtcgtcgctggagaaaaggcgggttcgaagctaacaaaa
gccaaagagcttggggtaccagtattaactgaagctgagtttgccgaacttttgtccgat
gaataa
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integrated database retrieval system
