Dyadobacter endophyticus: ACN9ML_28720
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Entry
ACN9ML_28720 CDS
T11334
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dend Dyadobacter endophyticus
Pathway
dend03030
DNA replication
dend03410
Base excision repair
dend03420
Nucleotide excision repair
dend03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dend00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACN9ML_28720 (ligA)
03410 Base excision repair
ACN9ML_28720 (ligA)
03420 Nucleotide excision repair
ACN9ML_28720 (ligA)
03430 Mismatch repair
ACN9ML_28720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dend03032
]
ACN9ML_28720 (ligA)
03400 DNA repair and recombination proteins [BR:
dend03400
]
ACN9ML_28720 (ligA)
Enzymes [BR:
dend01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACN9ML_28720 (ligA)
DNA replication proteins [BR:
dend03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACN9ML_28720 (ligA)
DNA repair and recombination proteins [BR:
dend03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACN9ML_28720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACN9ML_28720 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACN9ML_28720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACN9ML_28720 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH_5
HHH
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
XRV39726
LinkDB
All DBs
Position
7047716..7049803
Genome browser
AA seq
695 aa
AA seq
DB search
MNPEQRIQELSEKLHYYNDRYYQESVSEISDYEFDQLLKELQALENQYPEFKQDDSPTQR
VGGTVTKAFNAVYHRYPMLSLDNTYNEEELRSFDDRVRRGLDGEAYEYICELKFDGISLS
FTYENGVLVRGVTRGDGTRGDEITNNVKTIRSLPLRVKADNLPPLFEIRGEGFMPTSSFQ
KLNEEMDTLGENQYANPRNAASGSFKLQDSAETARRGLDCYLYYFLSDDDYFKSHEESLL
GIKSWGFNVSPGWKKVSNIDEVIEYIHEWEEKRMHLPLATDGIVIKVNSFAQQKELGFTA
KSPRWAISYKYKAENKPAVLRMVTYQVGRTGAVTPVANLCDLSERALPYNQVKGVHLSGT
RVKRATLHNANELERLGIRIGDTVFVEKSGEIIPKITGVDVSQREKYETEEIVFPTHCPE
CNSELQRNEGEVAFFCPNDSHCPPQLKGRIEHFIHRKAMNIESLGEGKIELLFDLDLVRT
PADLYDLNYDKLLGLEKNLVNEETGKVKKISFREKTVDNILKGIDLSRTVPFKNVLFALG
IRFVGQTVAEKLAAYFKSMRALRAASYDQLVAVPEIGGRIALSIESFFSVPENQLLVERL
EQAGLQMEGDEKPVEIESDLLDGKTFVISGVFENFERDELKEKIEANGGKVLSGVSGKLN
YLLAGANMGPSKLEKARKLGVTILSEEEFLAMIGN
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccgaacagagaatccaggagctttccgaaaagctgcattactataatgaccgc
tattaccaggagagcgtgtctgaaatatccgattatgaatttgaccagttgctcaaagag
ctgcaagccctggaaaatcagtatccggaattcaaacaggacgattcgcccacgcagcgg
gttggcgggacggtaaccaaggcgttcaatgcggtgtaccaccggtacccaatgctgtcg
cttgacaatacttataacgaggaggagctccgcagtttcgacgaccgcgtacgccgggga
ttggatggcgaggcttacgaatatatatgtgagctgaaattcgacgggatttccctcagt
ttcacttacgaaaacggcgttctcgtgcgcggcgtgacgcgcggcgacggtacgcgcggg
gacgagatcaccaataatgtaaaaacaatccgctcgctgccactacgcgtgaaggccgac
aacctgccgccattgttcgaaattcgcggggagggtttcatgccgacttcttcatttcaa
aaactgaatgaggaaatggatacattaggagaaaaccagtatgccaatccccgcaatgcg
gcttccggctcgtttaaattgcaggattctgccgaaacggcgcgtcgcgggctcgattgt
tacctctattactttttgtcggatgatgattatttcaaaagtcacgaggaaagcctgcta
ggcatcaaatcatggggtttcaatgtctcgccgggctggaagaaagtctctaacatcgac
gaggtcatcgagtacattcatgaatgggaggagaagcggatgcatttgccgctcgctacg
gatggcattgtgattaaggtaaactcatttgctcagcaaaaagaacttggttttacggct
aaaagtccacgctgggcgatttcctataaatataaggccgaaaacaaacctgccgtgctg
cggatggtaacctaccaggtaggccggacgggtgctgtgacgcctgtcgcaaacctgtgc
gacctctccgagcgcgcattgccttacaaccaggtgaaaggtgtgcatttgtcgggtacg
cgggtgaagcgggcgactttgcataatgctaacgagctggaaaggcttggtatccgcatt
ggggatacggtttttgtggaaaaaagcggggagattatcccgaagattacgggcgtagac
gtttcgcaacgcgaaaagtacgaaaccgaggagatcgttttcccgacgcattgcccagaa
tgtaattcggaattgcagcgcaacgaaggagaagtggcatttttctgcccgaacgacagc
cattgcccgccgcaattgaaagggcgcatcgaacatttcattcaccgaaaggcgatgaat
atcgaaagtttgggtgaaggcaaaatagagctcctatttgatctggatctcgtgcgcacg
cccgcggacctgtacgatctcaattacgacaagctgctgggcctggaaaagaacctggtc
aacgaagaaaccggaaaggtcaaaaagatcagtttccgtgagaaaacggtcgacaatatc
ctcaaaggcatcgatttgtcgcgaacggttccatttaaaaatgtgctttttgcattgggc
attcgcttcgtaggccagactgtggccgaaaagctggccgcctattttaaatccatgcgg
gcattgcgggccgcttcctatgatcagctcgttgcagtacctgaaatcggcggccgcatt
gcgttgagcatcgaatcgtttttcagtgtgccggaaaatcagctgctcgttgagcgattg
gagcaagccgggttgcaaatggaaggcgacgaaaaaccggtggaaattgaaagcgacctg
ctggatggcaagacgtttgtgatttcgggtgttttcgaaaatttcgagcgggacgagctg
aaagagaagatcgaagcgaatggcggaaaagtgcttagcggggtatccggaaagctcaac
tatttgctcgcaggagcgaatatggggccttccaagctcgaaaaagcgcggaaactgggc
gtaaccatcctctccgaggaagaatttttagcaatgattggaaattaa
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