KEGG   Desulfobulbus oralis: CAY53_01650
Entry
CAY53_01650       CDS       T05339                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
deo  Desulfobulbus oralis
Pathway
deo03030  DNA replication
deo03410  Base excision repair
deo03420  Nucleotide excision repair
deo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:deo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CAY53_01650
   03410 Base excision repair
    CAY53_01650
   03420 Nucleotide excision repair
    CAY53_01650
   03430 Mismatch repair
    CAY53_01650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:deo03032]
    CAY53_01650
   03400 DNA repair and recombination proteins [BR:deo03400]
    CAY53_01650
Enzymes [BR:deo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CAY53_01650
DNA replication proteins [BR:deo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CAY53_01650
DNA repair and recombination proteins [BR:deo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CAY53_01650
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CAY53_01650
   MMR (mismatch excision repair)
    DNA ligase
     CAY53_01650
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CAY53_01650
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 Nlig-Ia HHH BRCT DNA_ligase_ZBD PTCB-BRCT Zn_ribbon_NUD
Other DBs
NCBI-ProteinID: AVD70353
UniProt: A0A2L1GL02
LinkDB
Position
410346..412391
AA seq 681 aa
MANRAPDSGREAAAQRLATLRRELHRHAHHYYVLDDPLISDGEYDQLFRELLDLEAGFPE
LVTPDSPSHRVGGAPLTAFRQVVHKSPLLSLDNIFNEMELADFAGRMRRALPAATLGFMA
EPKLDGLAVELVYEQGLLVSGSTRGDGVTGEDITAQLKTVRGIPLKLQGPGERLPELQVR
GEVFLSKKGFAELNRQRGQAGEPLFANTRNAAAGSLRQLDPAVTAKRPLAFYVYGAGNPE
ALQVDSQEALLQALGRCGFPVNPLVALCDTEGAMAAHYRKLQDLRPSLDYDIDGMVVKVN
AYAQQERLGATARAPRWAVAWKFPPSQMTTTVEAVEFQVGRTGVITPVAVLTPVRIEGAM
VRRATLHNQDEMARKDIRLGDRVLVQRAGDVIPEVVKVMAEARDGSEKAVAFPTLCPACG
QALERRADEAAVRCVNPECGGRLLQRLIHFAGKSGMDFEGLGKKQVELLLNKGLLTDAPG
FFTLDMQALAALEGWGEKSAAKVLAAIERRRTVPLARFLMALGIRHVGASTAELLADRFP
TLEALQAASTADLLDLDGIGEEVAASVHAAFHDPAMLALLKRFHAAGLRIAGQESGTNTA
ARALAGRVFLFTGTLPSLSRDQARQMAKAAGAQVATAISRRVTDLVAGAKAGGKLAEAGR
LGIPVLDEAAFLELVEGQHGE
NT seq 2046 nt   +upstreamnt  +downstreamnt
atggcaaatagggccccggattccggccgcgaggcggcggcgcagcgtctggccacgttg
cgccgcgaactccaccggcatgcccaccactactatgtgctggacgatccgctgatcagc
gacggcgaatacgaccagctgttccgggagcttctggacctcgaagccgggtttccggag
ctggtcaccccggattcgcccagtcaccgcgtgggcggcgctcccctgaccgctttccgg
caggtcgtgcacaagagcccgcttttgagcctggacaatatcttcaacgagatggagctg
gccgattttgccggccggatgcggcgtgccctgcctgccgccacactcgggttcatggcg
gaacccaagctggacggtctggccgtagagctggtctacgagcaggggctgctggtatcc
ggctccacccggggcgacggcgtgaccggtgaagacatcacggcgcagctcaaaaccgtg
cgcggcattcccctgaaattgcaggggcccggcgagcgcttgcccgaactccaggtgcgg
ggcgaggtttttttgtccaagaagggctttgccgaactgaaccgccagcgcggtcaggcg
ggggagccgctttttgcgaacacgaggaatgcggctgccggttccctgcgccagctcgat
ccggcggtcacagccaaaaggccgctggccttttatgtctacggcgcgggcaacccggaa
gccctgcaggtggattcccaggaagcgcttctgcaggccctgggccgctgcggctttccg
gtgaatccgctggtggccctctgcgacacggaaggggcaatggcggcccattaccgcaaa
ctgcaggatctcaggcccagcctggactacgacattgacggcatggtcgtcaaggtgaac
gcctacgcccagcaggaacgtctgggcgcaaccgcccgcgcgccccgctgggccgtggcc
tggaaatttccgcccagccagatgaccacgacggtcgaggccgtggaatttcaggtgggc
cgcaccggcgtgattacgcccgtggccgtgctgacgccggtcaggatcgagggcgccatg
gtgcgcagggccaccctgcacaatcaggacgagatggcgcgcaaggacatccgcctgggg
gacagggtgttggtgcagcgggcaggcgatgtcattcccgaagtggtcaaggtcatggcc
gaggcgcgggacggcagcgaaaaggcggtggccttccccacgctctgcccggcctgcggg
caggcgctcgaacgcagggcagacgaggctgcggtgcgctgcgtcaacccggaatgcggc
ggccggcttttgcagcggctcatccactttgccggcaagagcggcatggacttcgagggt
ctgggcaaaaagcaggtggagcttctgctgaacaaggggctcctgacggacgcgcccggc
ttcttcacgctggacatgcaggccctcgccgctctcgagggctggggcgaaaaatccgcg
gccaaggtcctggccgccattgaacggcggaggacagtgccactcgcccgttttctcatg
gccctgggcatcagacatgtgggcgccagcacggcggaactcctggccgatcgctttccc
acgctggaggcgctgcaggccgccagcaccgcggatctgctggatctggacggcatcggc
gaggaggtggcggcctcggtgcacgccgccttccatgatccggccatgctggcgctcctg
aaacgctttcacgcagcgggcctgcgcatcgccgggcaggagtcgggcaccaacacagcg
gccagggccctggcgggccgggtctttctctttaccggcacactcccgagcctcagccgc
gatcaggccaggcagatggccaaagccgcaggggcgcaggtggccactgccatcagccgg
cgcgttaccgatctggtggcaggagcgaaggcgggcggcaagctcgcggaagccgggcgg
ctgggcatccccgtgctggacgaagccgcctttctcgaactggtggagggccagcatggc
gaataa

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