Dermacoccus sp. PAMC28757: H7F30_13195
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Entry
H7F30_13195 CDS
T08446
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
derm
Dermacoccus sp. PAMC28757
Pathway
derm03030
DNA replication
derm03410
Base excision repair
derm03420
Nucleotide excision repair
derm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
derm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H7F30_13195 (ligA)
03410 Base excision repair
H7F30_13195 (ligA)
03420 Nucleotide excision repair
H7F30_13195 (ligA)
03430 Mismatch repair
H7F30_13195 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
derm03032
]
H7F30_13195 (ligA)
03400 DNA repair and recombination proteins [BR:
derm03400
]
H7F30_13195 (ligA)
Enzymes [BR:
derm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H7F30_13195 (ligA)
DNA replication proteins [BR:
derm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H7F30_13195 (ligA)
DNA repair and recombination proteins [BR:
derm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H7F30_13195 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H7F30_13195 (ligA)
MMR (mismatch excision repair)
DNA ligase
H7F30_13195 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H7F30_13195 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QNK52524
LinkDB
All DBs
Position
complement(2782306..2784525)
Genome browser
AA seq
739 aa
AA seq
DB search
MSEKTTKQAPDALRSEVPDEVRRRAAELTEQIDAHQFAYYVKDAPTVSDGAYDALLRELQ
QIEDEHPELRSPQSPTQRVGGTYSTEFTPVDHVERMLSLDNAFSPEELAEWGERVAREAN
TTYHYLCELKIDGLAINLLYENGKLVRGVTRGDGRTGEDVTLNVRTIDGIPHELTGDDVP
ALVEIRGEVFFPVAAFEKLNEGLVEEGKSPFANPRNAAAGSLRQKDPAKTARRPLRMLVH
GIGARTGFDITRQSEAYELLAAWGLPTSPYAKVLDTMEQVQEFVAAYGGEQRHSVEHEID
GVVVKVDEVAVQRQLGNTSRAPRWAIAYKYPPEEVNTKLLDIAVNVGRTGRVTPFGVMEP
VTVAGSTVEMATLHNAFEVKRKGVLIGDTVVLRKAGDVIPEIVGPVVEARTGDEREFVMP
THCPSCGTELAYEREGNKDIRCPNARTCPSQLRERLFSLAGRGAFDIEALGWEGSIALLE
SGVLTDESTLFDLTYDDIARVGIYTRAAKKNDPEEKVRDGRVVSATGLKLLDNLEKAKGQ
PLWRVIVALSIRHVGPTAARALATQFGSIDAIRGADEEALAATDGVGSVIARSVKEWFGV
DWHENIVASWATSGVRMEDETDASITKTLDGLTIVATGSLDDFTRDGVKEAIIARGGKAS
GSVSKKTDYVVLGANAGSKATKAEELGLRILDEEQFKILLEGGPAALGDGVDDTDDDADA
ATAQPIADNDNTTYEKDDA
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagaagacgacgaaacaggctcccgacgccctgcgcagtgaggtgcccgacgag
gtgcgtcggcgcgcagccgagctgaccgagcagatcgacgcccaccagttcgcgtactac
gtcaaggacgctccgaccgtcagcgacggcgcctacgacgcgctccttcgtgagctgcag
cagatcgaggacgaacaccccgaactgcgttcaccgcagagcccgacccagcgtgtcggg
ggcacctactccacggagttcacccccgtcgaccacgtcgaacggatgctctcgctcgac
aacgcgttcagccccgaggaactggccgagtggggtgagcgcgtcgcccgagaggcgaac
accacctaccactacctgtgtgaactcaagatcgacggcctcgccatcaacctgctctac
gagaacggcaaactcgtgcgcggcgtgacccgcggtgacggacgcaccggtgaggacgtc
acgctcaacgtccgcacgatcgacggcatcccgcacgaactcacgggtgacgacgtgccg
gcgctcgtcgagatccgcggtgaggtgttcttccccgtcgcggcattcgaaaagctcaac
gagggcctcgtcgaggaggggaagtcgccgttcgcgaacccgcgaaacgcggctgccgga
tccctgcggcagaaggacccggcgaagacggcacgacggccgttgcggatgctcgtgcac
ggcatcggcgcacgcaccggtttcgacatcacacgtcagagcgaggcctacgaactgctc
gccgcatggggtctgccgacgtcgccctacgccaaggtgctcgacacgatggagcaggtg
caggagttcgtcgcggcttacggtggcgagcagcgtcactccgtcgagcacgagatcgac
ggagtcgtcgtcaaggtcgacgaggtcgccgtgcagcgtcagctgggcaacacctcgcgt
gcgccgcgctgggccatcgcgtacaagtacccgcccgaggaggtcaacacgaaactcctc
gacatcgccgtcaacgtcgggcgcaccggtcgcgtcacgccgttcggcgtcatggagccg
gtcaccgtggcgggctcgaccgtcgagatggccaccctccacaacgcgttcgaggtgaag
cgcaagggggttctcatcggcgacacggtcgtcctgcgcaaggcaggggacgtcatcccc
gaaatcgtcgggccggtcgtcgaagcgcgtaccggtgacgagcgtgaattcgtcatgccc
acgcactgcccgtcgtgcggcacggagctcgcctacgagcgtgagggcaacaaggacatc
cgctgtccgaacgcgcgcacctgcccgtcgcagttgcgcgagcggctcttctccctcgcc
ggtcgcggtgcgttcgacatcgaggcgctcgggtgggagggctccatcgcgctgctcgag
tcgggcgtgctcaccgacgagtccaccctcttcgacctcacctacgacgacattgcgcgg
gtaggcatctacacgcgggccgcgaagaagaacgaccccgaggagaaggtgcgcgacggg
cgcgtcgtctccgccacggggctcaagctcctcgacaacctcgagaaggcgaagggccag
ccgctctggcgggtcatcgtcgccctgtcgatccggcacgtcggcccgacggccgcccgc
gcactggctacgcagttcggctcgatcgacgccatccgtggggccgacgaggaggcgctc
gcagctaccgacggcgtgggctccgtcatcgcccgctccgtgaaggaatggttcggcgtc
gactggcacgagaacatcgtcgcgtcgtgggcgacgagcggcgtgcgcatggaggacgag
accgacgcgtcgatcacgaagacgctcgacggtctcaccatcgtcgccaccggttccctc
gacgacttcacgcgtgacggcgtcaaggaggccatcatcgcgcgcggcggcaaggcctcc
ggaagcgtgagcaagaagaccgactacgtcgttctcggagccaacgccggctccaaggcg
acgaaggcggaggagttgggcctgcgcatcctcgacgaggagcagttcaagattctgctc
gagggcggtcccgcagctctgggtgatggcgtcgacgacaccgatgacgatgcggacgcc
gccaccgcgcagcccatcgccgacaacgacaacacgacctacgagaaggacgacgcatga
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integrated database retrieval system
