Desulfuromonas soudanensis: DSOUD_2935
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Entry
DSOUD_2935 CDS
T04049
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
des
Desulfuromonas soudanensis
Pathway
des03030
DNA replication
des03410
Base excision repair
des03420
Nucleotide excision repair
des03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
des00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSOUD_2935 (ligA)
03410 Base excision repair
DSOUD_2935 (ligA)
03420 Nucleotide excision repair
DSOUD_2935 (ligA)
03430 Mismatch repair
DSOUD_2935 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
des03032
]
DSOUD_2935 (ligA)
03400 DNA repair and recombination proteins [BR:
des03400
]
DSOUD_2935 (ligA)
Enzymes [BR:
des01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DSOUD_2935 (ligA)
DNA replication proteins [BR:
des03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSOUD_2935 (ligA)
DNA repair and recombination proteins [BR:
des03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DSOUD_2935 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSOUD_2935 (ligA)
MMR (mismatch excision repair)
DNA ligase
DSOUD_2935 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSOUD_2935 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
5_3_exonuc
PE-PPE
YhfH
Motif
Other DBs
NCBI-ProteinID:
ALC17663
UniProt:
A0A0M3QGE2
LinkDB
All DBs
Position
3209710..3211836
Genome browser
AA seq
708 aa
AA seq
DB search
MDPIQARTRHEELCRQLHRHNHLYYVLDTPEITDAEYDRLFRELLDLERGFPELATPDSP
SQRVGATPLEKFEIIHRERPMLSLDNAKDEGDLQNFEKKIKNKLKTSHSNFEYICEMKID
GVAVELTYQLGKLILASTRGDGINGEVITENIKTINAIPLVLKYPYPSFLEVRGEVFIHT
KDFEDLNRERTKNGQPTFANPRNAAAGSLKQLDSSETAKRPLNFFSYGIGKAEWDKPKSH
FELLQRLSSLGLPVNTKGTKVVKNIKDAITFYKELTELRDVLEFEIDGLVIKINNSEVQN
QLGTTSRAPIWAIAYKFPARSEETELEDIDVQIGRTGSVTPVAILKPVRVSGVTISRASL
HNFDHLKRLDVRKGDQVIVERAGDVIPQVVSAVLEKRLANSEPYTPPTQCPTCGSKIHQE
HGDVNWYCTGGLTCSSQSIETLKHFVSKGAFDIDGLGESHIKIFHSEGLIKRPSDIFYLE
QKLSPQKSLFDHTPQGIIPLEERTGWGKKSANNLFESIQKSKSVSLSCFIYSLGIRGIGK
TSANILAEKYKSIEHLLDIIKRTITNSTKEHNDLLRTEGIGPKAVSAILDFFDNPSNYDE
INKLIHIVEIQKISQPALNLPLQGKRIVFTGSLESMSRDEAENGAKNLGATISTSVSKGT
DIVVAGPGAGSKLEKAKKLEIRTLTEKQWVDYLENLKTGQNDEETEQT
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggacccgatacaggccagaacacgccatgaagagctgtgccgccaactccaccgtcac
aaccatctgtattacgtccttgacaccccggaaatcaccgacgccgagtacgaccggctc
ttccgcgagctgctcgatttggaaaggggcttcccagaactggccacccccgactccccg
tcccagcgggtcggagccacccccttggaaaagttcgagattatccaccgcgaaaggccg
atgctctcacttgacaacgcgaaagatgagggcgacctgcaaaactttgaaaaaaaaatc
aaaaacaaactgaaaacatcccacagcaattttgaatatatttgtgagatgaaaatcgat
ggggtggcagtcgaactaacatatcaacttggtaaactgattttggcctcaacgcggggc
gatggcattaacggagaagtaatcacagaaaacataaaaacaattaacgccatacccctc
gtgctaaagtatccatatccttcgtttttagaagttcgcggtgaggtgtttatacacaca
aaggattttgaagatctcaaccgagaacgcaccaaaaatggccaaccaactttcgcgaat
ccaagaaatgctgctgcaggtagcttgaaacaactcgactcaagcgaaaccgcaaaacgc
cctttaaatttttttagttatggcattggcaaagcggaatgggataaaccaaaaagtcat
tttgaacttctgcaaaggctaagttcactgggtctaccagtaaataccaaggggacaaaa
gttgttaaaaacattaaagatgctatcactttttacaaagaactaaccgagcttagagat
gttctcgaatttgaaatagatggccttgtcataaagatcaacaattccgaagtacagaac
caattaggaacaacatctagagctccaatatgggccatagcttacaaattccctgcaaga
agtgaagagaccgagctcgaagacatagatgttcaaataggtcgaaccggctcagtcaca
ccagtcgctatattgaaacccgttagggtaagcggggtaacaatctcccgtgcaagccta
cacaactttgaccatttaaagagactagatgtccgaaaaggtgatcaagtaatagttgaa
cgggccggagatgtaatccctcaagttgtttcagcggtactcgagaaaagacttgcgaat
tcggaaccatatacccccccaacccaatgccctacatgtgggagtaaaattcatcaggag
catggggacgtcaattggtactgtacgggcgggctaacatgttcctctcaatcaatagag
accctcaagcacttcgtctcaaagggggcctttgacatagatggcctcggcgaatcgcac
ataaaaatttttcactctgaaggacttataaagagaccatcagacattttttatcttgaa
caaaagctttcaccccaaaagtctttatttgaccacacaccccaagggatcattccactt
gaagaaagaaccgggtggggtaaaaagtctgctaacaatctttttgaatcaattcaaaaa
agcaaatctgtttctcttagttgctttatttactcattaggcataaggggcattggcaaa
acatcagctaatatattagcagaaaaatacaaatccatcgagcatctattagatatcatc
aaaagaaccattacaaattccacaaaagagcacaatgacctcctcagaactgaaggtatt
ggccctaaggcagtcagtgctatcttagatttttttgataacccctctaactacgatgaa
atcaataaactaattcatattgtcgaaatccaaaaaatttcacaaccagctttaaacctc
ccacttcaaggcaagaggattgtctttacaggcagccttgaatccatgtcaagagacgaa
gcagaaaatggcgcaaaaaacttgggagcgaccatctcaacatctgtctcaaaaggaaca
gatattgtagtcgctggtccaggcgctggcagcaaattggaaaaagccaaaaaacttgaa
attcggacattgacggaaaaacagtgggtagattacttggaaaatctcaagactggacaa
aacgatgaagagacagagcagacctga
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