Desulfomicrobium sp. ZS1: NLA06_02620
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Entry
NLA06_02620 CDS
T08898
Name
(GenBank) helix-hairpin-helix domain-containing protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
desu
Desulfomicrobium sp. ZS1
Pathway
desu03030
DNA replication
desu03410
Base excision repair
desu03420
Nucleotide excision repair
desu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
desu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NLA06_02620
03410 Base excision repair
NLA06_02620
03420 Nucleotide excision repair
NLA06_02620
03430 Mismatch repair
NLA06_02620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
desu03032
]
NLA06_02620
03400 DNA repair and recombination proteins [BR:
desu03400
]
NLA06_02620
Enzymes [BR:
desu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NLA06_02620
DNA replication proteins [BR:
desu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NLA06_02620
DNA repair and recombination proteins [BR:
desu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NLA06_02620
NER (nucleotide excision repair)
GGR (global genome repair) factors
NLA06_02620
MMR (mismatch excision repair)
DNA ligase
NLA06_02620
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NLA06_02620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
HHH
RlmA_N
zf-tcix
DNA_pol_lambd_f
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
UTF50805
LinkDB
All DBs
Position
592504..594351
Genome browser
AA seq
615 aa
AA seq
DB search
MTLPLDLPSEAHRLVERLTEYNDAYRRGTPLVGDAQYDLLLARLRELDSDHPFLHRVEPE
TFSGKREIRHPVPMLSTDKAYTPEELERFVARVEKEAGEIGVTEVRYRVTPKLDGLAGRD
DGTFFVTRGNGESGYEVSSAFAKGMIPLGGRGRGVGEMVILQSYFQEHLSDAFEHPRNLV
VGIVSSDTVNELAKKALDDEAVRFVPYSELPSRVVSGTELLAGMDAITEELSGQVDYPLD
GMVVEVVDEDVRRTMGATSHHYRWQIAVKRKGETALTVVTGVVWQVGRTGKVTPVLMVEP
VNVSGATIRRVTAHNAGLLEKKGLGLGAEIEIIRSGEVIPKVEAVLVPAATELPTACPSC
GTALERENDFLLCRNEHCPDQVVQTIEHWFKTLGNADWFGRKTVEKLVRSGYDSLEKVYE
LGEEDFRAMGFGPVLSGNLAEAVYLSRTREVEDWRFLAALGIEDLGKGDSRKLLEQFRLQ
DLLTVSREQIEAVHGFGAITADSIARGLERVGPTLRHLLDLGFRIMPTGAAREKVTDSPL
AGKHVVFTGKMRGSREDMQEEARAQGALVQSAVNSKTDFLICGENVGASKLTKARQLGTE
ILQEDEYLRLIGAQG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgaccctgccgctggaccttccttctgaggcccaccggctggtcgagcgcctgaccgag
tacaacgatgcctaccgccgtggcacccccctggtcggcgacgcccagtacgatctgctg
cttgcgcggctgcgtgagctcgattcggatcacccttttctgcaccgggtcgagcccgag
accttttccggcaagcgcgaaattcgccatcccgtgcccatgctttccaccgacaaggcc
tatactcccgaggaactggagcgctttgtggcccgcgtggaaaaggaggccggggagatc
ggggtcacggaggtgcgctaccgggtcacgcccaagctcgacggcctggccggacgcgac
gacgggactttttttgtcacgcgcggcaacggtgagagcggctacgaggtcagttcggcc
tttgccaagggcatgatcccccttggcgggcgaggccggggcgtgggcgagatggtcatc
ctgcagagctatttccaggagcacctttccgacgccttcgagcatccgcgcaatctggtg
gtcggcatcgtgtcctcggacacggtcaacgagctggccaaaaaagccctggacgacgag
gccgtgcgcttcgtgccctattccgaactgccgagccgggtggtcagtgggacggagctg
ctggcgggcatggacgccatcacggaggaactttcgggccaggtggactacccgctggac
gggatggtggtggaagtggtggacgaggacgtgcgtcggaccatgggcgccaccagccac
cattaccgctggcagatcgcggtcaagcgcaagggcgagacggccctgaccgtggtgacg
ggcgtggtctggcaggtcggccgcaccggtaaggtcaccccggtgctcatggtcgaaccc
gtgaatgtctccggggcgaccatccgcagggtcacggcgcacaatgccggtctgctggag
aagaagggtctgggtctgggggcggaaatcgagatcatccgcagcggcgaggtcattccc
aaggtcgaggccgtgctggttccggccgcgaccgagctgcccacggcctgtccgtcctgc
gggacggctcttgaacgcgagaacgactttctgctgtgccgcaacgaacactgcccggat
caggtcgtgcagaccatcgagcactggttcaagaccctcggcaatgccgactggttcgga
cgcaaaaccgtggaaaagttggtccgttcaggttatgacagccttgaaaaggtgtacgaa
ctgggcgaggaggattttcgggccatgggtttcggtcccgtgctgtccggcaatctggcc
gaggccgtgtacctgagccgcacccgcgaggtcgaggactggcgttttctggctgcgctt
ggcattgaggatctgggcaagggcgacagccgcaagctcttggagcagtttcgtctccag
gatctcttgaccgtcagccgggagcagatcgaggccgttcatggcttcggcgccatcacg
gcggactccatcgccagggggcttgagcgcgtgggtccgactctgcgccatttgctggac
ctgggttttcgcatcatgcccaccggcgcggctcgcgaaaaggtcacggacagtcccctg
gccggaaagcatgtggtcttcaccggcaagatgcgcggctcgcgcgaggatatgcaggaa
gaggcccgcgcccagggagcattggtgcagagtgcggtcaattccaaaaccgattttctg
atctgcggcgagaacgttggcgcaagcaaactcaccaaggcccgtcagctcggcacggaa
attttgcaggaagatgaatatctgcgcctcatcggcgcgcaagggtaa
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