Dehalococcoides mccartyi 195: DET0596
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Entry
DET0596 CDS
T00223
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
det
Dehalococcoides mccartyi 195
Pathway
det03030
DNA replication
det03410
Base excision repair
det03420
Nucleotide excision repair
det03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
det00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DET0596 (ligA)
03410 Base excision repair
DET0596 (ligA)
03420 Nucleotide excision repair
DET0596 (ligA)
03430 Mismatch repair
DET0596 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
det03032
]
DET0596 (ligA)
03400 DNA repair and recombination proteins [BR:
det03400
]
DET0596 (ligA)
Enzymes [BR:
det01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DET0596 (ligA)
DNA replication proteins [BR:
det03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DET0596 (ligA)
DNA repair and recombination proteins [BR:
det03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DET0596 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DET0596 (ligA)
MMR (mismatch excision repair)
DNA ligase
DET0596 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DET0596 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
5_3_exonuc
BRCT_2
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
AAW40111
UniProt:
Q3Z8W1
LinkDB
All DBs
Position
complement(545122..547155)
Genome browser
AA seq
677 aa
AA seq
DB search
MFSPRTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTADSPTQ
RVGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLLGNAAFQIDCEPKMDGLAV
ALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVYLPKEGFA
KLNRERADKGLSLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYAEDSLLPDSHWQI
LEYFSRLGFKINPRNRLVNTLEEAKEYYREMAENRDSLPYEADGVVFKVDSVSLQQKLGD
AGREPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLHNED
DILRKDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETLFNPKLSRPACPVCG
GEIYRPAGEAMHYCANVSCPAQFERQLEHFVSRGTMDIRGIGESLSVILAQEGLVKNVSD
LYYLTAADLLKLPRMGEKSADNIIKAIADSKSRPLDRVIFGLGIRHVGNETAALLSSRYG
DIWALAGAGLDELQTIPDIGAKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSYKP
LPLSGVEFVVTGKLDSLSREEAQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKARSM
GVKELSEQEFINMLEQS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgttttccccccgaacggaaatagaaaacctgaggcgcgagataaaccgccataaccag
ctgtattacgttcaggacaaccctgaaatatctgattccgagtatgacgccttgctccgc
cgcttaaaagagctggaggaagcccaccctgagcttgttacggcggactcccccacccaa
agagtgggggctgagccgctaaaggccttcggcattgtcaatcacccttatccgctgctt
tctctggcaaatgccttttcagatacggaactggaagcctggtacctgcgggtaaagaaa
ctgctggggaatgccgcttttcagatagactgcgaacccaaaatggacgggctggcagtt
gcacttacctaccgaaacggcaagtttaccaccggcgctacccggggtgacggctttcag
ggtgaaaatatcacccgaaacctgagaactatccattctatacccttaaataccgaggag
gacgccccccctgtttttgaaataaggggtgaagtgtatcttccaaaagaaggcttcgcc
aagctcaaccgcgaaagggctgataaagggctatccctttttgccaacccccgcaatgcc
gccgccggttcgctccgccagcttgacccgtcagtaacggccgaaagaccgctggatata
tttatttatgctctggggtatgcggaagacagcctgctgcctgacagccactggcagata
ctggaatatttcagccgcctgggttttaagataaacccgcgtaaccgtctggtaaacacc
ctggaagaagccaaagaatactaccgtgagatggcggaaaaccgggattccctgccctac
gaagcagacggggtagtcttcaaggtagattccgtatccctgcagcaaaaactgggggat
gcgggacgtgaaccccgctgggctatcgcctataaatttccggccgaacaggtcactacc
ctccttaggaaaataggcatatcggtaggccgtaccggcactttaaacccgtatgctatc
cttgaaccggtaaatgtaggcggggtagtggtaaaacaggccagtttgcataacgaagat
gatatcctccgcaaggatatccgtgaaggggatacggtagtaatccagcgggcgggggaa
gtaataccagaggtagttgccccggtgctggctaaacgcagccccgaatcaaaacccttc
agcatggaggaaaccctgtttaaccccaaacttagccgcccggcctgcccggtgtgcgga
ggggaaatataccgccccgcaggcgaggctatgcactactgtgccaacgtttcctgcccc
gcccagtttgaacgccagctggaacactttgtttccagagggactatggatatccgcggc
atcggcgaaagcctgagcgtgatactggcacaagagggactagtcaaaaacgtatctgac
ctttactacctgactgcggctgatttactgaaactgccgcgcatgggtgaaaaaagtgcg
gataatataataaaagctatcgcagacagcaaaagccgcccgctggacagggtaatattc
gggctgggtatccgccacgtgggaaatgagacagccgctttgctatccagccgctacggt
gatatatgggcactggcgggggcagggcttgatgaactgcaaactataccggatataggt
gccaagatagccagcagcataaaagcctatttcagcgaagaaaaaaacatagcggtcatc
cgccgtttggaaacagccggagtaaagcttgcttcagaccaaaagccctcatacaaacct
ctgccgctttccggagtggagtttgtagttaccggcaaactggatagtttaagccgcgaa
gaagcacagcaaaaaatccgctcacttggcggcacggccaaggacaatgttaccaaagca
acccgctatctggtggtaggtgctgatgccggctccaagctggccaaagcccgcagtatg
ggggtaaaagagctgtccgaacaggaatttataaatatgctggagcaatcttga
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