Dehalogenimonas etheniformans: HX448_06435
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Entry
HX448_06435 CDS
T08265
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
deth
Dehalogenimonas etheniformans
Pathway
deth03030
DNA replication
deth03410
Base excision repair
deth03420
Nucleotide excision repair
deth03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
deth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HX448_06435 (ligA)
03410 Base excision repair
HX448_06435 (ligA)
03420 Nucleotide excision repair
HX448_06435 (ligA)
03430 Mismatch repair
HX448_06435 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
deth03032
]
HX448_06435 (ligA)
03400 DNA repair and recombination proteins [BR:
deth03400
]
HX448_06435 (ligA)
Enzymes [BR:
deth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HX448_06435 (ligA)
DNA replication proteins [BR:
deth03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HX448_06435 (ligA)
DNA repair and recombination proteins [BR:
deth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HX448_06435 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HX448_06435 (ligA)
MMR (mismatch excision repair)
DNA ligase
HX448_06435 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HX448_06435 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH
PTCB-BRCT
HHH_3
HHH_8
RNA_pol_A_CTD
5_3_exonuc
cEGF
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QNT76349
LinkDB
All DBs
Position
complement(955968..958025)
Genome browser
AA seq
685 aa
AA seq
DB search
MTDLLKAQARVQELRREIEHHNYQYYVLDAPEISDEEYDALLRELQKLETEFPSLVTPAS
PTQRVGAEPLKAFGVVRHRRPLLSLGNAFTKDELRDWVQRVTKLLPGEKLEFVCEHKMDG
LAVALTYENGQFSVGATRGDGEEGENVTQNLRTIHSIPLKVRDDAPQSFEVRGEVFLPRS
GFEKMNKEREKEGLPLFANPRNAAAGSLRQLDPSVTAKRPLDAFLYQLGWVEDRWMPETH
WDALQLIKKWGFKLNPNNRRCADITEIEKYYNEWYAKRDGLPYEADGIVVKLNSIDQQKR
LGSVAREPRWAIAFKFPAHRATTQLKDIGISVGRTGTLNPYAVLEPVYVGGVVIRQATLH
NEDNIRRKDIRLGDTVIVQRAGDVIPQIVGPVLEKRKNTPPAFSIEEKLKGKDGKAHCPV
CGSEIYHPQGEVMYYCPNAACPAQIQESLEHFTSRPAMDIRGIGEKLSAAFLVEGLVKNV
ADLYDLKTEQLASREGMGEKSANNIISAIEKSKTRPLPNVFFALGIRHIGEENAALLVKQ
FGSLKALSEATRTQLDAIPGIGEKIVDSIVAYFQNKTNEKVVERLLTVLKTPQVETEKKA
GPLKCEEYVITGTLKSMSREQAWEKIRTAGGTTKPDITKNTKYLVVGEDAGSKLEKAKAR
GIKSITEEELLKMINPPASGQPRLL
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccttctgaaagcccaggcgcgggtgcaagaactacgccgtgagatagaacac
cacaactatcaatactatgtattagacgctcccgaaatttccgatgaagagtacgatgcc
ctgcttcgtgaacttcaaaagctggagaccgaatttccctctctggtgacgcctgcttcg
ccaacccaacgtgttggcgccgaacccttgaaagcctttggagtggtcaggcatcgtcgc
ccgctcctttctctaggtaatgcatttaccaaagacgaacttcgtgattgggtacaaagg
gttacaaaactattgcccggcgagaaattggaattcgtctgcgagcataagatggatgga
ttagccgtagctctgacctacgaaaacggccagttctctgtcggtgcgaccaggggtgac
ggtgaggaaggcgagaatgtcacccagaatctgagaactattcacagcataccgctcaaa
gtccgcgatgacgctccccaatcattcgaagtgcgtggagaggtatttttgcctagatct
ggattcgagaagatgaacaaggagcgagaaaaagaaggcttgcctcttttcgccaatccg
cgaaatgccgctgctggttcgctgcgacagttagatccttctgtgaccgccaaaaggcca
ctcgatgccttcttgtatcagcttggctgggttgaagacaggtggatgcccgagactcat
tgggacgcccttcagcttattaaaaaatggggattcaagttgaatccgaacaatcggcgt
tgcgccgatattaccgaaatcgaaaaatattacaatgaatggtacgccaaacgggatggc
ttgccttatgaagccgatggcatagtcgttaaactaaattcgattgaccaacagaagcgg
ttgggttcagtggcgcgcgagccgcggtgggctatcgcttttaaatttcctgcccaccgg
gcgacaacccagcttaaagacatcggtataagcgtcggtcgtaccggtacgcttaatcct
tacgccgtacttgagcctgtctacgttggcggcgtggtcattcgacaggctacgctgcac
aatgaggacaatatccgccgtaaggatattcgcctcggcgacacagtgattgtgcaaaga
gctggagatgtaattcctcaaatcgttgggccggtgcttgaaaaacgtaaaaacaccccc
ccggcatttagcatagaagaaaaacttaagggcaaagacggtaaagcccattgccctgta
tgcggttctgaaatctatcacccgcagggcgaagtcatgtactattgtcccaatgcggca
tgtccggcacaaatccaggagagcctcgaacatttcacttcgcgcccggcgatggacatc
cggggcatcggcgaaaaactatccgcagccttccttgtagaaggtttggtcaagaatgtt
gccgatttatacgatctaaaaacagaacaactagcatcgcgcgaaggcatgggggagaaa
agcgccaacaatatcatctctgccattgaaaagtccaaaactcgccctctgcctaacgtg
ttctttgctcttgggatacggcatattggcgaagaaaatgccgccttgctggtcaaacag
ttcggaagccttaaagccttgtcagaagcgacacggactcagctggatgccattcccggt
attggcgaaaaaatagttgacagcattgtggcgtatttccagaacaaaaccaatgaaaaa
gttgttgaacgacttctgactgttctaaaaactccacaagtggagaccgagaaaaaggcc
gggccgcttaagtgtgaggagtacgtaatcactggaaccctgaaatccatgagccgtgaa
caggcttgggagaaaatacgtacagccggaggaacaaccaaaccagatatcaccaaaaat
acaaaatacctcgttgttggtgaagacgccggttccaagctggaaaaggctaaggctagg
ggaataaagtcgattaccgaggaagaattattgaagatgatcaatcctcccgcttcaggc
caaccgaggctgctttag
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