Dehalococcoides mccartyi VS: DhcVS_536
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Entry
DhcVS_536 CDS
T01136
Symbol
dnlJ
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dev
Dehalococcoides mccartyi VS
Pathway
dev03030
DNA replication
dev03410
Base excision repair
dev03420
Nucleotide excision repair
dev03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DhcVS_536 (dnlJ)
03410 Base excision repair
DhcVS_536 (dnlJ)
03420 Nucleotide excision repair
DhcVS_536 (dnlJ)
03430 Mismatch repair
DhcVS_536 (dnlJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dev03032
]
DhcVS_536 (dnlJ)
03400 DNA repair and recombination proteins [BR:
dev03400
]
DhcVS_536 (dnlJ)
Enzymes [BR:
dev01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DhcVS_536 (dnlJ)
DNA replication proteins [BR:
dev03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DhcVS_536 (dnlJ)
DNA repair and recombination proteins [BR:
dev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DhcVS_536 (dnlJ)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DhcVS_536 (dnlJ)
MMR (mismatch excision repair)
DNA ligase
DhcVS_536 (dnlJ)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DhcVS_536 (dnlJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
HHH
5_3_exonuc
BRCT_2
Zn_ribbon_RRN7
PP_kinase_C_1
Motif
Other DBs
NCBI-ProteinID:
ACZ61688
UniProt:
D2BH88
LinkDB
All DBs
Position
complement(499912..501954)
Genome browser
AA seq
680 aa
AA seq
DB search
MEDMFSPQTEIENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTPNS
PTQRVGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYLRVKKLLGNAAFQIDCEPKMDG
LAVALTYRNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPPVFEIRGEVYLPKE
GFAKLNCERADKGLSLFANPRNAAAGSLRQLDPLVTAERPLDIFIYALGYAEDSLLPDSH
WQILEYFSRLGFRINPRNRLVNTLAEAKEYYREMTENRDSLPYEADGVVFKVDSVSLQKK
LGDAGREPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLH
NEDDILRKDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETLFNPKLSRPACP
VCGGEIYRPAGEAMHYCANVSCPAQFERQLEHFVSRGAMDIRGIGESLSVILAQEGLVKN
VSDLYYLTAADLLKLPRMGEKSADNIIKAISDSKSRPLDRVIFGLGIRHVGNETAALLSS
RYGDIWALAGAGLDKLQTIPDIGAKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPS
HKSLPLSGVEFVVTGKLESLSREETQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKA
RSMGVKELSEQELINMLEQS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggaagatatgttttccccccagactgaaatagaaaacctgaggcgtgaaataaaccgc
cataaccagttgtattacgttcaggataaccctgaaatctctgattccgaatatgatgcc
ttgctccgccgcttaaaagagctggaggaagcccaccctgagcttgttaccccgaactca
cccacccaaagagtgggtgctgagccgctaaaggccttcggcattgtcaatcacccttat
ccgctgctttctctggcaaatgccttttcagatacggaactggaagcctggtacctgcgg
gtaaaaaagctgctggggaatgccgcttttcagatagactgcgaacccaaaatggacggg
ctggcagttgcactgacctaccgaaacggcaagtttaccaccggcgctacccggggtgac
ggctttcagggtgaaaatattacccgaaacctgagaactatccattctatacccttaaat
accgaggaggatgccccccctgtttttgaaataaggggtgaagtttatcttccaaaagaa
ggcttcgccaaactcaactgcgaaagggctgataaagggctatccctttttgccaacccc
cgcaatgccgccgccggttcactccgccagcttgacccgttagtaacggccgaaagaccg
ctggatatatttatttatgctctggggtatgcggaagacagcctgctgcctgacagccac
tggcagatactggagtacttcagccgcctgggtttcaggataaacccgcgtaaccgtctg
gtaaacaccctggcagaagccaaagaatactaccgtgagatgacggaaaaccgggattcc
ctgccctacgaagcagacggggtagtattcaaggtggattccgtatccctgcagaaaaaa
ctgggggatgcgggacgtgaaccccgctgggctatcgcctataaatttccggctgaacag
gtcactaccctccttaggaaaataggcatatcggtaggccgtaccggcactttaaacccg
tatgctatccttgaaccggtaaatgtaggcggggtagtggtaaaacaggccagtttgcat
aacgaagatgatatactccgcaaggatatccgtgaaggggatacagtagtaatccagcgg
gcaggcgaagtaatacctgaggtagttgccccggtactggctaaacgcagccccgaatca
aaacccttcagcatggaagagaccctgtttaaccccaaacttagccgcccggcctgcccg
gtgtgtggaggggaaatataccgccctgcaggcgaggctatgcactactgtgccaacgtt
tcctgtcccgcccagtttgaacgccagctggaacactttgtttccagaggggctatggat
atccgcggcatcggcgaaagcctgagcgtgatactggcacaagagggattggtcaaaaac
gtatcagacctttattacctgactgcggctgatttactgaaactgccgcgcatgggcgaa
aaaagtgcggataatataataaaagccatctcagacagcaaaagccgcccgctggacagg
gtaatattcgggctgggtatccgccacgtggggaatgagacagccgctttgctatccagc
cgctacggggatatatgggcactggctggggcaggtcttgataaactgcaaaccataccg
gatataggtgccaagatagccagcagcataaaagcctatttcagcgaagaaaaaaacata
gcggtcatccgccgtttggaaacagccggagtaaagcttgcttcagaccaaaagccctca
cataaatctctgccgctttccggagtggaatttgtagttaccggcaaactggaaagttta
agccgcgaagaaacacaacaaaaaatccgctcacttggcggcacggccaaggacaatgtt
accaaagcaacccgctatctggtggtaggtgctgatgccggctccaagctggctaaagcc
cggagtatgggggtaaaagagctgtccgaacaggaacttataaatatgctggagcaatct
tga
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