Devosia sp. D6-9: GHV40_07585
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Entry
GHV40_07585 CDS
T10671
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
devd Devosia sp. D6-9
Pathway
devd03030
DNA replication
devd03410
Base excision repair
devd03420
Nucleotide excision repair
devd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
devd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GHV40_07585 (ligA)
03410 Base excision repair
GHV40_07585 (ligA)
03420 Nucleotide excision repair
GHV40_07585 (ligA)
03430 Mismatch repair
GHV40_07585 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
devd03032
]
GHV40_07585 (ligA)
03400 DNA repair and recombination proteins [BR:
devd03400
]
GHV40_07585 (ligA)
Enzymes [BR:
devd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GHV40_07585 (ligA)
DNA replication proteins [BR:
devd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GHV40_07585 (ligA)
DNA repair and recombination proteins [BR:
devd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GHV40_07585 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GHV40_07585 (ligA)
MMR (mismatch excision repair)
DNA ligase
GHV40_07585 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GHV40_07585 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
FdhE_central
Motif
Other DBs
NCBI-ProteinID:
QMV04082
LinkDB
All DBs
Position
1534334..1536541
Genome browser
AA seq
735 aa
AA seq
DB search
MEFQDEVENLSEAQAKAELDKLQEAIARADIAYHQNDAPEITDAEYDAMKVRYGAIEMAF
PQLRRADSLTGKVGAPAAEGFAKVRHAVPMLSLAKAYTDQDVIDFIDRGHRFFERDKDLV
LEFVTEPKIDGLSASLRYEKGVFVKGATRGDGTVGEDITANLKTIADIPQQLHGTDWPDV
IEIRGEVYMTYADFEALKARSAAEGGQDYVNPRNTAAGSLRQKDPTVTAQRNLHFFAYAW
GDASSLPADTQWGMIQAIKSWGFKVNELTERTASTEEMLRQYRLIEEKRSSLGYDIDGVV
YKLDRLDLRERWGYVTGEPRWAIAHKFPAEQAMTVVKRIDIQVGRTGTLAPVARLEPVTV
GGVVVENVTLHNEDYIKGFDSNGEPIRDGIDIRVGDTVVIQRAGDVIPQIVKVVIEKRPA
DAVPYEFPHTCPVCGSPAVREVNEKTGKEDSRRRCTGELICSAQAVERLRHFVSRGAMDI
EGLGAENIDTFFNAGLIKTAADIFTLKDRRPEVQRALAERREEQARLREAASGKTRKNVR
GVEDRNYEGLEKLFAAIDARREPELDRFIFALGILHIGSTTAAILARTFGTMEELIRVGK
ATAAHEGDPHEVFPSIDGIGDTVIGSLIAFFGNERNDEVIDRLLEQVHPKPYVVTVSADS
LVAGKTVVFTGTLEKMSRSEAKAMAERHGAKVAGSVSSATDILVAGPGAGSKLKKAEELG
ILVLDEDGWFDLIAK
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atcgagttccaggacgaggtcgagaacctatccgaggcgcaggccaaggccgagctggac
aagctccaggaagcgattgcccgcgccgatatcgcctatcaccagaacgacgcccccgag
atcacggacgccgagtacgacgccatgaaggtgcgctacggcgccatcgagatggcgttc
ccgcagctgcgccgcgccgacagcctcacgggcaaggtcggcgccccggcggcggaaggc
ttcgccaaggtgcgccatgccgtgccgatgctcagcctcgccaaggcctataccgaccag
gacgtcatcgacttcatcgatcgcggccatcgcttcttcgagcgcgacaaggatctggtg
ctcgaattcgtcaccgagcccaagatcgatggcctctcggcctcgctgcgctacgaaaag
ggtgtcttcgtcaaaggcgccacgcgtggcgacggcacggtgggcgaggacatcaccgca
aacctgaagaccatcgccgacattccgcagcagctgcatggcacggactggccggacgtc
atcgagatccgcggcgaggtctacatgacctatgccgatttcgaggcgctgaaagcgcgg
tcggcggccgagggcgggcaggattacgtcaatccgcgcaacaccgccgccggttcgctg
cgccagaaggaccccacggtcaccgcgcagcgcaacctgcacttcttcgcctatgcctgg
ggcgatgcatcgagcctaccggccgatacgcaatggggcatgattcaggcgatcaagagc
tggggcttcaaggtcaacgaactgaccgagcgcaccgcctcgaccgaggaaatgctgcgg
caataccggctgatcgaggagaagcgttcctcgctcggctacgacatcgacggcgtggtc
tacaagctcgaccggctcgacctgcgcgagcgctggggctatgtcaccggcgagccgcgc
tgggccatcgcccacaagttcccggccgaacaggccatgaccgtggtcaagcgcatcgac
atccaggtcggccgcaccggcacgctggcgcccgtcgcccggcttgagccggtgacggtg
ggcggcgtcgtggtcgagaacgtcacgctccacaacgaagactacatcaagggtttcgac
agcaacggcgaacccatccgcgacggcatcgacatccgcgttggcgacaccgtcgtcatc
cagcgtgcgggcgatgtcattccgcagatcgtcaaggtggtgatcgagaagcgcccggcc
gatgccgtgccgtacgaattcccgcatacctgcccggtctgcggctccccggcggtgcgc
gaggtcaacgagaagaccggcaaggaagattcccgccgccgctgcacgggcgagctcatc
tgctcggcgcaggccgtcgaacggctgcgccacttcgtgtcccgcggggcgatggatatc
gagggcctgggggccgagaacatcgatacgttcttcaatgccggcctcatcaagaccgcc
gccgacatcttcaccctcaaggaccggcgtccggaggtgcagcgcgccctcgccgagcgt
cgcgaggagcaggcgcggctgcgcgaggcggcgagcggcaagacccgcaagaacgtgcgc
ggcgtcgaggatcgcaattacgaggggctcgaaaagctcttcgcggccatcgatgcgcgg
cgcgagccggagctcgaccgcttcatcttcgcgctcggcatcctccatatcggcagcacc
acggcggccatcctggcgcgcaccttcggcaccatggaagagctgatccgtgtgggcaag
gccacggctgcccacgagggcgatccccacgaggtcttcccctccatcgacgggatcggc
gacacggtcatcggctcgctcatcgcctttttcggcaacgagcggaacgacgaggtgatc
gaccgcctgctcgagcaggtacacccgaagccttatgtcgtgaccgtttcggctgacagc
ctggtggcgggcaagacggtggtgttcacgggtacactcgaaaagatgtcgcgcagcgag
gccaaggccatggccgaacggcatggggccaaggtggccggctcggtgtcgtccgctacc
gatattctcgtggcgggaccgggtgcaggctccaagctcaagaaggccgaagagctggga
atccttgttttggacgaagacggctggttcgatctcatcgccaaatag
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