Defluviicoccus sp. SSA4: HWD60_08075
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Entry
HWD60_08075 CDS
T06717
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dex
Defluviicoccus sp. SSA4
Pathway
dex03030
DNA replication
dex03410
Base excision repair
dex03420
Nucleotide excision repair
dex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HWD60_08075 (ligA)
03410 Base excision repair
HWD60_08075 (ligA)
03420 Nucleotide excision repair
HWD60_08075 (ligA)
03430 Mismatch repair
HWD60_08075 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dex03032
]
HWD60_08075 (ligA)
03400 DNA repair and recombination proteins [BR:
dex03400
]
HWD60_08075 (ligA)
Enzymes [BR:
dex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HWD60_08075 (ligA)
DNA replication proteins [BR:
dex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HWD60_08075 (ligA)
DNA repair and recombination proteins [BR:
dex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HWD60_08075 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HWD60_08075 (ligA)
MMR (mismatch excision repair)
DNA ligase
HWD60_08075 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HWD60_08075 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QLH38902
UniProt:
A0A7D5RXY3
LinkDB
All DBs
Position
complement(1668612..1670702)
Genome browser
AA seq
696 aa
AA seq
DB search
MSVRETPVEDLSAEQAADELAALAAEIAAHDQAYYQEDAPLVSDAEYDALRQRNTAIEAR
FPELVRVDSPSRKVGAPAAAGFARXEHARPMLSLANAFSDTDLEEFVAGVRRFLKELRED
PQMPLETVAEPKIDGLSISLRYENGRFTVGATRGDGFTGENVTANLKTMADIPERIDGAP
DVFEVRGEVYMTRAEFAELNERQRTAGGKVFANPRNAAAGSLRQLDPKITRSRPLRFFAY
AWGEISGSLPATHRDFLDWLQSFGFPVNPLARLCADADAMLAYYRELEAQRASLAYDIDG
IVFKVNRLDWQERLGFVSRAPRWAIAQKFPAEQARTTLQDIRIQVGRTGTLTPVAELTPV
TVGGVVVSRATLHNEDEIKRKDVRVGDTVIVQRAGDVIPQVVGVVPEDRPADSVPFAFPD
HCPECDSLAVREPGEVAWRCTGGLICPAQAVERLRHFVSRNAFDIEGLGEKHIAAFWRDQ
LLAGPADIFRLRAREAELKTREGWGRXSVDNLLAAIEARRKIALERFIYALGIRQVGEAT
AKLLARHYRSLAAWQTAMTDAADPESDAYRELVSIDGVGPSMATDLTAFAAEPHNQSVLD
DLGREVEVQDFAGPTTIAASPLAGKTIVFTGALQRMTRSEAKARAESLGANVAGSVSKKT
HFVVLGADAGSKAAKASALGVTTLSEDDWLALIGER
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgcgcgaaacgccggtcgaggacctgagcgccgaacaggcggcagacgagctg
gcagcgctcgcagccgagatcgccgcccacgaccaagcctactaccaggaggacgcaccg
ctcgtcagcgacgccgaatacgatgcgctgcgacagcgcaacaccgcgatcgaagcgcgc
tttcccgagctggtgcgtgttgattctccatcgcgcaaggtgggcgctccggccgcggcc
ggcttcgccaggntcgaacacgcgcgcccgatgctatcgctcgccaacgcgttcagcgac
accgacctggaggagttcgtcgccggcgtccgccggttcctgaaggagctgcgcgaggat
ccgcagatgccgctggaaacggtggcggagccgaaaatcgacggcctgtcgatctcgctg
cgctacgagaacggccggttcacggtcggcgccacccgcggcgacggcttcaccggcgag
aacgtcaccgccaacctcaagacgatggcagacatcccggagcggatcgacggggcgccc
gacgtcttcgaagtgcggggcgaggtctacatgacccgcgccgaatttgcggaattgaac
gagcggcagcggacggccggcggcaaggtgttcgccaacccgcgcaacgccgcggccggc
tcgctgcgccagctcgacccgaagatcacccggtcgcggccgctgcgcttcttcgcctac
gcctggggcgagatcagcggctccctgcccgccacgcaccgggattttctcgactggctg
cagtcgttcggctttccggtcaatccgctggcccggctgtgcgcggatgcggatgccatg
ctcgcctactaccgcgagctggaggcgcagcgcgccagcctcgcctatgacatcgacggc
atcgtcttcaaggtcaaccggctcgactggcaggagcggctcggcttcgtcagccgggcg
ccgcgctgggcgatcgcgcagaagttcccggccgagcaggcccgcacgacgctgcaggac
atccgcatccaggtcgggcgcaccggcacgctgacgccggtcgccgaactcacgccggtc
acggtgggtggcgtggtggtctcgcgtgccaccctgcacaacgaggacgagatcaaacgc
aaggacgtccgcgtcggcgatacggtgatcgtgcagcgcgcgggcgacgtcatcccgcag
gtggtaggcgtggtgccggaggaccggccggccgattccgtcccgttcgcctttccggac
cactgcccggagtgcgatagcctcgcggtacgcgagccgggcgaagtggcatggcgctgc
accggtgggctgatctgcccggcgcaggcggtcgaacggctgcgccacttcgtctcccgc
aacgcgttcgacatcgaagggctcggcgaaaagcacatcgcagccttctggcgcgaccaa
ttgctcgccggccccgccgacatcttccgcctgcgcgccagggaggccgagctgaagacg
cgcgagggctgggggcganagtcggtcgacaacctgctggcggcgatcgaggcgcgacgg
aagatcgcgctggagcggttcatctatgcgctcggcatccgccaagtgggcgaagcgacg
gccaagctgctggcgcgccactaccgatctctcgccgcgtggcaaacggcgatgaccgat
gccgccgatcccgagtccgatgcctaccgcgagctggtctcgatcgatggcgtcggtccg
tcaatggccaccgatctgacggcattcgcggccgagccgcacaaccagtctgtgctcgat
gacctcggccgcgaggtcgaggtgcaggacttcgcaggccccaccaccattgcggcgtca
ccgcttgccggcaagacgatcgtctttaccggcgccctgcagcggatgacgcgcagcgag
gcgaaggcgcgggccgaatctctgggagccaacgtcgcgggttcggtgtcgaaaaagacg
catttcgtcgtcctcggcgccgatgccggctcgaaggcggcgaaggcgagcgcgctgggc
gtgacgacgctcagcgaggacgactggctggcgctgatcggcgagcgctga
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