KEGG   Deinococcus ficus: DFI_09050
Entry
DFI_09050         CDS       T05674                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
dfc  Deinococcus ficus
Pathway
dfc03030  DNA replication
dfc03410  Base excision repair
dfc03420  Nucleotide excision repair
dfc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dfc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DFI_09050
   03410 Base excision repair
    DFI_09050
   03420 Nucleotide excision repair
    DFI_09050
   03430 Mismatch repair
    DFI_09050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dfc03032]
    DFI_09050
   03400 DNA repair and recombination proteins [BR:dfc03400]
    DFI_09050
Enzymes [BR:dfc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DFI_09050
DNA replication proteins [BR:dfc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DFI_09050
DNA repair and recombination proteins [BR:dfc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DFI_09050
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DFI_09050
   MMR (mismatch excision repair)
    DNA ligase
     DFI_09050
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DFI_09050
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 5_3_exonuc
Other DBs
NCBI-ProteinID: ASN82130
UniProt: A0A221SZU8
LinkDB
Position
complement(1851162..1853201)
AA seq 679 aa
MPPLADPDLNELHSHYLKLRSEVAGHNRAYYEQDAPTIPDDQYDALVRELRDLEARHPAW
ADEHSPAQTVGGAVSTAFQPVTHPTPMTSLDNVFNDEELREWGEKLARSLNLPPEYDDFT
FTGELKIDGLSVNLYYLNGELQWAATRGNGQVGEIVTDQVLTIPGIPRKLEGLTGELEVR
GEVYMSRADFAAFNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRNLKAILYALGKRD
GVPARTQGEVLAWLRERGFPTSAYSESLHGLQAAADYHARMIAGRSRFEFDADGTVLKLD
PLRLQEEAGFTSRAPRWAIAYKFPVEEVETTLEAITVNVGRTGKLAPLAHLSPRLIEGST
VSKATLHNEDFIAEMDLRIGDTVVVRKSGGVIPQIMRVVLEKRPDTAQPYAFPTTCPECG
HAATRAEGDANTYCPNPACPSQQFERLRYFVSRGAMDVRGIGEKLITQLLEQGLVQDAAG
LYRLTAEQLAALERGGEKKAQNVLAQLDASRTRPLWRLVNALGMNHVGERNAQALARHFG
TLDALLAATPEQIAAVPGMGGVIAQSVTAALQDPTMQGLIARLREAGLSPQEEQTVRGEQ
LAGLNFVITGTLTRPRDEITAQLEGAGGRVTGSVTKKTSYLIAGEEAGSKLARAQELGVT
VLDEPGLAALLAERGVTPA
NT seq 2040 nt   +upstreamnt  +downstreamnt
atgccgccgctcgctgatcctgatctgaacgaactgcactcacattacctgaagctgcgc
agcgaggtcgccgggcacaaccgcgcctactacgagcaggacgcgcccaccatccccgac
gaccagtacgacgccctggtccgcgaactgcgcgacctcgaagcgcggcaccccgcctgg
gccgacgagcacagccccgcccagacggtcggcggcgcggtctccaccgccttccagccg
gtcacgcaccccacccccatgaccagcctggacaacgtcttcaacgacgaagaactgcgc
gagtggggcgagaaactcgcccgctccctgaacctcccccccgagtacgacgacttcacc
tttaccggcgaactcaagatcgacggcctgagcgtgaacctgtactacctgaacggcgaa
ctccagtgggccgccacccgcggcaacgggcaggtcggcgagatcgtcaccgaccaggtc
ctcaccatccccggcatcccccggaaacttgagggcctgaccggtgaactggaggtccgc
ggcgaggtgtacatgagccgcgcggacttcgccgccttcaacgcccaggccgaggaactc
ggcacgcccctgctgaaaaacccccgcaacggcgcggccggcgcgctgcgccagaaagac
ccggaagtcacccgcacccgcaacctcaaggccatcctatacgcgctgggcaaacgcgac
ggcgtgcccgcccgcacccagggcgaggtgctggcctggctgcgcgagcgcggcttcccc
accagcgcgtactccgagtccctgcacggcctgcaggccgccgccgactaccacgcccgc
atgatcgccgggcgcagccgcttcgaattcgacgcggacggcaccgtcctgaaactcgac
ccgctgcggctgcaggaggaggccgggttcaccagccgcgcgccccgctgggcgatcgcg
tacaagttcccggtggaggaggtggaaaccaccctggaggccatcaccgtgaacgtgggc
cgcaccgggaaactcgcgccgctcgcacacctctcgccgcggctgatcgagggcagcacc
gtcagcaaggccaccctgcacaacgaggacttcatcgccgagatggacctgcgcatcggg
gacaccgtggtcgtgcgcaagtccggcggggtgatcccgcagatcatgcgcgtggtgctc
gaaaagcgccccgatactgcccagccctacgccttccccaccacctgccccgaatgcggg
cacgccgccacccgcgccgagggcgacgccaacacctactgccccaaccccgcctgcccc
tcgcagcagttcgagcgcctgcgctacttcgtgtcccgcggcgccatggacgtgcgcggc
atcggggagaaactcatcacgcagctgctcgaacagggcctcgtgcaggacgccgccggg
ctgtaccgcctgaccgccgagcagctcgccgcgctggaacgcggcggggagaaaaaagcg
cagaacgtcctggcgcagctcgacgccagccgcacccggcccctgtggagactggtcaat
gccctgggcatgaaccacgtcggcgaacgcaacgcccaggccctcgcccggcacttcggc
acgctggacgccctgctggccgccacacccgagcagatcgcggcggtacccggcatgggc
ggcgtgatcgcccagagcgtgaccgccgcgctgcaggaccccaccatgcagggcctgatc
gcgcgcctgcgcgaggccggcctgagtccgcaggaggaacagaccgtgcgcggcgaacag
ctcgccggactgaacttcgtgatcaccggcaccctgacccgcccccgcgacgagatcacg
gcccagctcgaaggcgccgggggccgcgtgaccggcagcgtcaccaagaagaccagttac
ctgatcgccggggaggaagcaggcagcaaactcgcccgcgcgcaggaactcggcgtgacc
gtgctggacgaacccggtctggccgccctgctcgccgagcgcggcgtgactcccgcctga

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