Deinococcus ficus: DFI_09050
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Entry
DFI_09050 CDS
T05674
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dfc
Deinococcus ficus
Pathway
dfc03030
DNA replication
dfc03410
Base excision repair
dfc03420
Nucleotide excision repair
dfc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DFI_09050
03410 Base excision repair
DFI_09050
03420 Nucleotide excision repair
DFI_09050
03430 Mismatch repair
DFI_09050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dfc03032
]
DFI_09050
03400 DNA repair and recombination proteins [BR:
dfc03400
]
DFI_09050
Enzymes [BR:
dfc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DFI_09050
DNA replication proteins [BR:
dfc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DFI_09050
DNA repair and recombination proteins [BR:
dfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DFI_09050
NER (nucleotide excision repair)
GGR (global genome repair) factors
DFI_09050
MMR (mismatch excision repair)
DNA ligase
DFI_09050
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DFI_09050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ASN82130
UniProt:
A0A221SZU8
LinkDB
All DBs
Position
complement(1851162..1853201)
Genome browser
AA seq
679 aa
AA seq
DB search
MPPLADPDLNELHSHYLKLRSEVAGHNRAYYEQDAPTIPDDQYDALVRELRDLEARHPAW
ADEHSPAQTVGGAVSTAFQPVTHPTPMTSLDNVFNDEELREWGEKLARSLNLPPEYDDFT
FTGELKIDGLSVNLYYLNGELQWAATRGNGQVGEIVTDQVLTIPGIPRKLEGLTGELEVR
GEVYMSRADFAAFNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRTRNLKAILYALGKRD
GVPARTQGEVLAWLRERGFPTSAYSESLHGLQAAADYHARMIAGRSRFEFDADGTVLKLD
PLRLQEEAGFTSRAPRWAIAYKFPVEEVETTLEAITVNVGRTGKLAPLAHLSPRLIEGST
VSKATLHNEDFIAEMDLRIGDTVVVRKSGGVIPQIMRVVLEKRPDTAQPYAFPTTCPECG
HAATRAEGDANTYCPNPACPSQQFERLRYFVSRGAMDVRGIGEKLITQLLEQGLVQDAAG
LYRLTAEQLAALERGGEKKAQNVLAQLDASRTRPLWRLVNALGMNHVGERNAQALARHFG
TLDALLAATPEQIAAVPGMGGVIAQSVTAALQDPTMQGLIARLREAGLSPQEEQTVRGEQ
LAGLNFVITGTLTRPRDEITAQLEGAGGRVTGSVTKKTSYLIAGEEAGSKLARAQELGVT
VLDEPGLAALLAERGVTPA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgctcgctgatcctgatctgaacgaactgcactcacattacctgaagctgcgc
agcgaggtcgccgggcacaaccgcgcctactacgagcaggacgcgcccaccatccccgac
gaccagtacgacgccctggtccgcgaactgcgcgacctcgaagcgcggcaccccgcctgg
gccgacgagcacagccccgcccagacggtcggcggcgcggtctccaccgccttccagccg
gtcacgcaccccacccccatgaccagcctggacaacgtcttcaacgacgaagaactgcgc
gagtggggcgagaaactcgcccgctccctgaacctcccccccgagtacgacgacttcacc
tttaccggcgaactcaagatcgacggcctgagcgtgaacctgtactacctgaacggcgaa
ctccagtgggccgccacccgcggcaacgggcaggtcggcgagatcgtcaccgaccaggtc
ctcaccatccccggcatcccccggaaacttgagggcctgaccggtgaactggaggtccgc
ggcgaggtgtacatgagccgcgcggacttcgccgccttcaacgcccaggccgaggaactc
ggcacgcccctgctgaaaaacccccgcaacggcgcggccggcgcgctgcgccagaaagac
ccggaagtcacccgcacccgcaacctcaaggccatcctatacgcgctgggcaaacgcgac
ggcgtgcccgcccgcacccagggcgaggtgctggcctggctgcgcgagcgcggcttcccc
accagcgcgtactccgagtccctgcacggcctgcaggccgccgccgactaccacgcccgc
atgatcgccgggcgcagccgcttcgaattcgacgcggacggcaccgtcctgaaactcgac
ccgctgcggctgcaggaggaggccgggttcaccagccgcgcgccccgctgggcgatcgcg
tacaagttcccggtggaggaggtggaaaccaccctggaggccatcaccgtgaacgtgggc
cgcaccgggaaactcgcgccgctcgcacacctctcgccgcggctgatcgagggcagcacc
gtcagcaaggccaccctgcacaacgaggacttcatcgccgagatggacctgcgcatcggg
gacaccgtggtcgtgcgcaagtccggcggggtgatcccgcagatcatgcgcgtggtgctc
gaaaagcgccccgatactgcccagccctacgccttccccaccacctgccccgaatgcggg
cacgccgccacccgcgccgagggcgacgccaacacctactgccccaaccccgcctgcccc
tcgcagcagttcgagcgcctgcgctacttcgtgtcccgcggcgccatggacgtgcgcggc
atcggggagaaactcatcacgcagctgctcgaacagggcctcgtgcaggacgccgccggg
ctgtaccgcctgaccgccgagcagctcgccgcgctggaacgcggcggggagaaaaaagcg
cagaacgtcctggcgcagctcgacgccagccgcacccggcccctgtggagactggtcaat
gccctgggcatgaaccacgtcggcgaacgcaacgcccaggccctcgcccggcacttcggc
acgctggacgccctgctggccgccacacccgagcagatcgcggcggtacccggcatgggc
ggcgtgatcgcccagagcgtgaccgccgcgctgcaggaccccaccatgcagggcctgatc
gcgcgcctgcgcgaggccggcctgagtccgcaggaggaacagaccgtgcgcggcgaacag
ctcgccggactgaacttcgtgatcaccggcaccctgacccgcccccgcgacgagatcacg
gcccagctcgaaggcgccgggggccgcgtgaccggcagcgtcaccaagaagaccagttac
ctgatcgccggggaggaagcaggcagcaaactcgcccgcgcgcaggaactcggcgtgacc
gtgctggacgaacccggtctggccgccctgctcgccgagcgcggcgtgactcccgcctga
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