Desulfovibrio fairfieldensis: AXF13_05565 Help Entry AXF13_05565       CDS       T04293                                  Name (GenBank) DNA ligase (NAD(+)) LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism dfi  Desulfovibrio fairfieldensis Pathway dfi03030   DNA replication dfi03410   Base excision repair dfi03420   Nucleotide excision repair dfi03430   Mismatch repair Brite KEGG Orthology (KO) [BR:dfi00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     AXF13_05565    03410 Base excision repair     AXF13_05565    03420 Nucleotide excision repair     AXF13_05565    03430 Mismatch repair     AXF13_05565  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:dfi03032]     AXF13_05565    03400 DNA repair and recombination proteins [BR:dfi03400]     AXF13_05565 Enzymes [BR:dfi01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      AXF13_05565 DNA replication proteins [BR:dfi03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      AXF13_05565 DNA repair and recombination proteins [BR:dfi03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      AXF13_05565    NER (nucleotide excision repair)     GGR (global genome repair) factors      AXF13_05565    MMR (mismatch excision repair)     DNA ligase      AXF13_05565   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       AXF13_05565 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 DNA_ligase_ZBD Nlig-Ia BRCT HHH PTCB-BRCT DZR_2 DUF4796_N Motif Other DBs NCBI-ProteinID:  AMD89622 UniProt:  A0A0X8JJA9 LinkDB All DBs Position 1319900..1322035 Genome browser AA seq 711 aa AA seqDB search MSPQNKPPVEQHSLLAPQPSAQERERARRLSAELERHNYLYHTLDAPEISDEQYDALFRE LTELEERWPGLRSPHSPTLRVGGRLLDGLAKKAHRRRMYGLDNVFSDEDWRDFVERMQRA WDTELNGPLPLGFWCDPKLDGLALEIIYENGLLIEALTRGDGEIGEVVTEAVRTIRTVPL RLRGEGPFPARLEVRGEVVMFKKDFEALNAQQEALGRKTFANPRNAAAGTLRQLDISVTE SRPLRFLAYSLGEADWAPAKPCLFQHELMARLTAYGFLTPPDGRLCAGADEVEAYAAWVR EHRQDFPMEIDGAVAKEDNLEAQEALGFTARAPRFAVAFKFPAMQAETRLTGIDIQVGRT GVLTPVAVLEPVPVGGVMVSRATLHNEDEIRARDVRVGDTVIVQRAGDVIPEVVGPVLSR RPPDAVEFVFPHTCPACGEAVHREPGEAAWRCDNLSCPAVRLRAISHFVSKAGLDIQGVG QKWIAQLVTSGRVQSPADLFTLKAEELLDFERMGEVLARKFVDALDEARHTATLPRLISA LGIRHVGEQTARLLAGHFRDLDDLGRADAETLQALPDVGPEVAASIRNFYESPANRAQLE RFRELGLWPLSPLADANSAETAQTQAGPLQGKNILFTGTLSLQRGKAQHLAEAAGAIPAG SVNKKLDFLVVGDKPGSKLDKARALGIAVLDEAGFRELLAASGIPLDHATE NT seq 2136 nt NT seq  +upstreamnt  +downstreamnt atgtcccctcagaacaagccccctgtcgagcagcattcgcttctcgcaccgcagccttcg gcgcaggagcgagagcgcgcccgtcggctcagcgccgagctggagcgccataattatctc tatcacactctggacgcgccggagatcagcgatgaacagtacgatgccctgttccgggag ctgacggagctggaagagcgctggcccggcctgcgcagcccgcattcgcccaccttgcgg gtgggcggcaggctgcttgatggtctggccaaaaaggcacaccgccgccggatgtacggc ctggacaacgtgttttccgacgaggactggcgcgacttcgtggagcgcatgcagcgcgcc tgggatacggaacttaacggccctctgccgctgggcttctggtgtgatcccaagctggac ggcctggctctggaaattatctatgagaacggcctcctgattgaagccctgacccgcggc gacggtgaaatcggcgaagtggtcaccgaagccgtgcgcaccatccgcaccgtgcccctg cgcctgcggggagaggggcccttcccggcccgcctggaagtacgcggtgaagtggtcatg ttcaaaaaggactttgaggccctcaacgcccagcaggaggccttgggccgaaaaaccttt gccaatccgcgcaacgccgccgccggcaccttacggcagctggatatttccgttaccgaa tcccgtcccctgcgctttctggcttacagcttgggcgaagcggactgggcgccggcgaaa ccctgcctgtttcagcatgaactcatggcgcgtttaacggcctacggctttctgactccc cccgacggcaggctctgcgccggagcggacgaggtggaagcctacgcggcctgggtgcgc gaacaccgtcaggattttcccatggaaatcgacggagccgtggccaaagaggataatctg gaagcccaggaggcgctgggcttcacggcacgcgcgccgcgtttcgccgtggccttcaaa tttccggccatgcaggctgaaacccggctcacgggcattgacattcaggtgggccgtacc ggcgtgcttacgcccgtggccgtactggagcccgtgcccgtgggcggggtcatggtttcg cgggccaccctgcataatgaggatgagatccgcgcccgcgacgtgcgcgtgggtgatacg gtcattgtgcagcgcgccggggacgtgatccccgaagtggtggggccggtgctgtccagg cgtccgcccgacgccgtggaattcgtctttccgcacacctgcccggcctgcggcgaagcc gtgcaccgcgagcccggcgaggctgcctggcgctgcgacaatctctcctgtccggcggtg cgcctgcgcgccatcagccattttgtatccaaggccggtctggatatccagggagtgggc cagaaatggatcgcgcaactggtgacctcgggccgggtgcaatctccggcggacctgttt acactgaaggcggaagagctgctggactttgaacgcatgggcgaggtgctggcccgaaag ttcgtggatgctctggacgaggccaggcatacggccacgttaccgcgcctgatcagcgcc ctgggcatccgtcatgtcggcgagcagaccgcgcgcctgctggccggacatttccgcgat ctggacgatctgggccgggccgacgccgaaaccttgcaggccttgcccgacgtggggccg gaggtggcggcctccatccgtaacttttatgaaagcccggccaaccgggcgcagctggag cgcttccgcgagctggggctctggcccctgagcccgctggcggacgcgaacagcgcggag acggcgcaaacgcaggccgggccgttacagggcaaaaacatacttttcaccggcacgctc tctctgcagcgcggcaaggcccagcatctggccgaagccgccggggccattccggcggga agtgtgaataaaaaactggattttctggtggtgggcgacaagccgggcagcaagctggac aaggcgcgtgctctgggcatcgccgtgctggacgaggcgggcttccgcgaactgctcgcc gcttcgggaatacccctggaccatgcaacagagtga

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