Dorea formicigenerans: NQ560_04315
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Entry
NQ560_04315 CDS
T08666
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dfm
Dorea formicigenerans
Pathway
dfm03030
DNA replication
dfm03410
Base excision repair
dfm03420
Nucleotide excision repair
dfm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQ560_04315 (ligA)
03410 Base excision repair
NQ560_04315 (ligA)
03420 Nucleotide excision repair
NQ560_04315 (ligA)
03430 Mismatch repair
NQ560_04315 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dfm03032
]
NQ560_04315 (ligA)
03400 DNA repair and recombination proteins [BR:
dfm03400
]
NQ560_04315 (ligA)
Enzymes [BR:
dfm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NQ560_04315 (ligA)
DNA replication proteins [BR:
dfm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NQ560_04315 (ligA)
DNA repair and recombination proteins [BR:
dfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NQ560_04315 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NQ560_04315 (ligA)
MMR (mismatch excision repair)
DNA ligase
NQ560_04315 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NQ560_04315 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
HHH
Nlig-Ia
Zn_ribbon_DUF2089
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
UWP20654
LinkDB
All DBs
Position
846539..848500
Genome browser
AA seq
653 aa
AA seq
DB search
MNRQERMKELVELLNKASKAYYQDAEEIMSNYEYDKLYDELQELERELGITLSNSPTVRV
GYEVVSELPKERHESPMLSLDKTKDVEELKNFVGDQKALMSWKMDGLTIVLTYRGGHLFK
AVTRGNGEVGEVITNNAKVFKNVPLQISYQGELILRGEAVIGYKDFEKINEQIQEAEAKY
KNPRNLCSGSVRQLNSEITAKRNVKFYAFTLVSAKDVDFHNSRACQMEWLKEQGFEVVEY
HEVIRDTVEAEVIKFSEKIAENDFPSDGLVLVYDDIAYGRSLGRTSKFPRDSFAFKWADE
IRQTKLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISIMEELELGVGDEIEVY
KANMIIPQIAQNLTRSGVKDIPKVCPVCGGKTEIRQVSNAKALYCTNPECQAKHVKAFAL
FASRDALNIEGLSEATLEKFIDRGFIKEFTDIFHLDKWQEEIQTMEGFGEKSYKNLIANV
EKAKVTTLPKVIYALGIPGIGLANAKVICREFSGDVDRMIHATAEELAEIQGVGEVLAGA
FVTYFQDEKHVESLKRLIAELEIPKEEESESQQIFAGVNFVITGSVEHFANRGEVKELIE
SLGGKVTGSVTSKTNYLINNDVTSTSSKNKKANELGVPIISEEQFIKMVEEQK
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgaacaggcaggaacgcatgaaggaactggtggagcttttgaataaagcatcaaaagca
tattatcaagacgcagaagaaatcatgagcaactatgagtacgacaagctttatgatgaa
cttcaggaattggagcgtgagctagggatcacactttccaacagtccgacggtgcgagtc
ggatatgaagtggtcagtgaactcccaaaagaacggcatgaaagcccaatgctttctttg
gacaagacgaaagatgtagaggaattaaagaattttgtgggagatcagaaggcactgatg
tcctggaaaatggacggacttaccattgttctgacttaccggggcggacatctttttaag
gcagtcactcgtggaaatggagaagtaggcgaggtcatcacaaacaatgcaaaagtcttt
aaaaatgtaccgcttcagatcagctatcaaggtgagctgatactgcgcggcgaagcagtg
atcggctataaagattttgagaagattaatgaacagattcaggaagcagaagccaaatat
aaaaatccgcgtaatctctgcagtggttctgtacgccagctgaacagtgagattacagca
aaaagaaatgtaaaattctatgcatttacactggtcagtgcaaaagatgtggatttccac
aattccagagcctgtcagatggaatggctgaaagagcagggatttgaagtagtagaatac
cacgaagtaataagagacacagtagaggcggaagttattaaattttcagaaaaaattgcc
gagaacgatttcccgtccgacggacttgtgttagtatatgatgatatagcgtatggaaga
tcactggggcggacgtctaagtttccacgagattcatttgcatttaaatgggctgatgag
attcgccagacaaagcttttggagattgagtggagtccatctagaacaggactcatcaat
ccggtcgctatctttgaaccggtggagctggagggaacgacagtgagccgtgctagtgtc
cacaacatcagtattatggaagaactggaacttggtgtgggggatgagattgaagtttat
aaggctaatatgatcattccgcagattgcacagaatctgacaagaagtggtgtgaaagat
attccaaaagtctgtccggtctgtggcggcaagacagagattcgccaggtcagcaatgca
aaagcactgtattgtaccaatccggaatgtcaggcaaagcatgtcaaagcatttgcactt
tttgcgagccgtgacgctttgaatattgaaggtttgtcagaggcaacgctggagaagttt
attgaccgtggatttataaaggaattcacagacattttccatttggataaatggcaggaa
gagattcagactatggaaggttttggagaaaaatcctacaagaacctgatcgcaaatgtg
gagaaagcaaaagtgacgacacttccgaaagtaatctatgcacttggaattccgggaatt
ggtcttgcaaatgcgaaggtcatctgcagagaattttccggtgatgtggatcgtatgatt
catgctactgcagaagaacttgcagagattcagggagtaggcgaagtacttgccggcgca
tttgtaacttattttcaggatgagaagcatgtagaaagcttaaagcgactgattgcagag
cttgagattccaaaggaagaagaatcagagagtcaacagatctttgccggagtgaacttt
gttattaccggaagtgtggaacattttgcaaacagaggagaggtcaaggaactgattgag
agcctgggaggaaaagttacgggatctgtcacttccaaaacaaattacctaatcaataat
gatgtgacatcgacttcatcaaagaataaaaaagcaaacgaactgggagttccgattatt
tcggaggagcagttcattaagatggtagaggaacaaaagtag
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