Dehalogenimonas formicexedens: Dform_00962
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Entry
Dform_00962 CDS
T04654
Symbol
ligA|ligB
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dfo
Dehalogenimonas formicexedens
Pathway
dfo03030
DNA replication
dfo03410
Base excision repair
dfo03420
Nucleotide excision repair
dfo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dform_00962 (ligA|ligB)
03410 Base excision repair
Dform_00962 (ligA|ligB)
03420 Nucleotide excision repair
Dform_00962 (ligA|ligB)
03430 Mismatch repair
Dform_00962 (ligA|ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dfo03032
]
Dform_00962 (ligA|ligB)
03400 DNA repair and recombination proteins [BR:
dfo03400
]
Dform_00962 (ligA|ligB)
Enzymes [BR:
dfo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dform_00962 (ligA|ligB)
DNA replication proteins [BR:
dfo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dform_00962 (ligA|ligB)
DNA repair and recombination proteins [BR:
dfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dform_00962 (ligA|ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dform_00962 (ligA|ligB)
MMR (mismatch excision repair)
DNA ligase
Dform_00962 (ligA|ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dform_00962 (ligA|ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_8
BRCT_2
RNA_ligase
zf-RRN7
Motif
Other DBs
NCBI-ProteinID:
APV44303
UniProt:
A0A1P8F777
LinkDB
All DBs
Position
complement(901882..903945)
Genome browser
AA seq
687 aa
AA seq
DB search
MTDNLLKAQARAQELRREIEHHNYQYYVLDAPQISDQEYDALLRELQKIETEYPALVTPD
SPTQRVGAEPLKAFGVVKHRRPLLSLGNAFTKDELREWVKRVTKLLPGEELEFVCEHKMD
GLAIALTYENGQFTVGATRGDGEEGENVTQNLKTIHSLPLKTHDGSPAAFEVRGEVFLPK
SGFEKMNKEREKEGLPLFANPRNAAAGSLRQLDPSVTAKRPLDCFLYQLGWVEGTGMPAT
HWDTLQLMKKWGFKLNPNNRQCATLAEIENYYDEWYAKRDGLPYEADGIVIKLNSIDQQN
TLGSVGREPRWAIAFKFPAHQATTQLKDIGISVGRTGTLNPYAILEPVYVGGVVIKQATL
HNEDDIRRKDIRLGDTVIVQRAGDVIPQIVGPVLEKRKGNPPVFSIEEKLKSKDGKSRCP
VCGSEIYRPKGEVMYYCPNSACPAQVQENLEHFTSRPAMDIRGVGEKLSAAFLAEGLVND
VADLYELKPDQLASREGMGEKSAGNILAAIEKSKTRPLANVIFALGIRHIGEENAALLAN
QFGTLKALSEATRDQIDAIPGIGDKIVDSIVAYFQNKTNETVVERLNSILKTPPVETAKK
TGPLDGEEFVITGILKSMSREQAWERIRAAGGTTKPDLTKNTSYLVVGEDAGSKLEKAQA
KGIRTISEEELLKMLNPPSSGQPRLFQ
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataatcttctgaaagcccaggcgagagcgcaggaactccgccgcgagatagaa
caccacaactaccagtattacgtgctggacgctccccagatttccgaccaggaatacgac
gctctcctccgcgaacttcaaaagatcgaaaccgaatatcctgccctggtgacgcccgac
tctccgacccagcgggtaggagcggagccgctgaaggccttcggcgtggtcaagcaccgc
cggccgctcctttccctgggcaacgctttcaccaaggacgaacttcgggaatgggtcaag
agagtaaccaaactattgcccggcgaagaactggaattcgtctgtgaacacaagatggac
ggcctggccatcgctctcacctacgaaaacggccagtttaccgtcggtgccacccggggc
gacggtgaagagggcgagaacgtcacccagaacctgaagaccattcacagcctcccgctc
aagacccatgacggttccccggctgctttcgaggtccgcggcgaggtcttcttacctaaa
tcgggcttcgagaagatgaacaaggagagagaaaaagaaggactgcctctctttgccaat
ccccgcaacgccgccgccggttccttgcggcagttggatccctcagttaccgctaagagg
ccgctggattgtttcctgtaccagcttggctgggttgaaggcacggggatgcctgcaacc
cattgggacacgctgcaactgatgaaaaagtggggtttcaagctaaatcccaacaacagg
caatgcgccaccctggccgaaatcgaaaactattacgatgaatggtacgccaaacgcgac
ggcctgccttacgaagccgacggaatcgtgatcaaactcaattcgatcgatcaacagaat
acactgggttcggttgggcgggaacccagatgggctatcgctttcaaattcccggcgcac
caggcgaccacccagctcaaagacatcggcatcagcgtcgggcgcaccggaacgctcaat
ccgtacgccattctcgaaccggtttacgtgggcggcgtggtcatcaagcaggccaccctc
cacaacgaagacgacatccgccgcaaagacatccggcttggggatacggtcatcgtccag
agggccggcgatgttattccccagatcgtcggtcccgtgcttgaaaagcgtaagggcaac
cctccagtgttcagtatcgaagaaaagctcaagagtaaagacggcaaatcgcgctgcccc
gtctgcggttctgagatatatcgcccgaagggcgaggtaatgtattactgccccaattca
gcctgtccggcgcaggtccaggagaacctggaacatttcacctcacgtccggccatggat
atccggggcgtgggtgaaaaactttcggcggcctttcttgccgaaggactggtcaacgac
gtcgccgatctctacgagttgaaacctgatcagttggcatctcgtgagggcatgggagag
aaaagcgcaggcaatatccttgccgcgatcgaaaaatcaaagacccggccgttggccaac
gtcatcttcgctctcggtatccgccacatcggggaagaaaacgcggccttactcgccaac
cagtttggtactctgaaagctttgtccgaggcgacgcgggatcaaatcgacgccattccc
ggcatcggcgataaaatcgtcgacagcatcgtggcctacttccagaacaaaacgaatgaa
acagttgtcgagcgcctgaattcgatcctgaaaacccctcccgtggagacggcaaaaaag
acagggccactggacggggaggagtttgtgataaccggtattttgaaatccatgagccgt
gagcaggcgtgggagaggatccgtgccgctggcggcacaaccaagccggatttaaccaaa
aacaccagctaccttgtagtaggggaagacgccggatccaaattggaaaaagcacaggca
aaaggcattcgaaccatatctgaagaagaactgttgaagatgctcaatccccccagttcc
gggcagccgaggttgtttcaatga
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