Dyadobacter fanqingshengii: NFI81_12870
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Entry
NFI81_12870 CDS
T08895
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dfq
Dyadobacter fanqingshengii
Pathway
dfq03030
DNA replication
dfq03410
Base excision repair
dfq03420
Nucleotide excision repair
dfq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NFI81_12870 (ligA)
03410 Base excision repair
NFI81_12870 (ligA)
03420 Nucleotide excision repair
NFI81_12870 (ligA)
03430 Mismatch repair
NFI81_12870 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dfq03032
]
NFI81_12870 (ligA)
03400 DNA repair and recombination proteins [BR:
dfq03400
]
NFI81_12870 (ligA)
Enzymes [BR:
dfq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NFI81_12870 (ligA)
DNA replication proteins [BR:
dfq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NFI81_12870 (ligA)
DNA repair and recombination proteins [BR:
dfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NFI81_12870 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NFI81_12870 (ligA)
MMR (mismatch excision repair)
DNA ligase
NFI81_12870 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NFI81_12870 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
HHH
PTCB-BRCT
DUF6001
DASH_Spc34
Zn_ribbon_6
DUF7083
Motif
Other DBs
NCBI-ProteinID:
USJ38640
LinkDB
All DBs
Position
complement(3081560..3083650)
Genome browser
AA seq
696 aa
AA seq
DB search
MNPEQQIQELVDKLQHLNYKYYQDNVSEVSDFEFDKLLKQLKELEDQYPELRQEDSPTLR
VGGTITKNFNTVYHRYPMLSLDNTYNEQELRNFDDRVRRGLDGEPYEYICELKFDGISLS
FTYENGVLVRGVTRGDGTRGDEITNNVKTIRSLPLRVKAENVPPVFEIRGEGFMPITSFQ
KLNEEMDTLGENQYANPRNAASGSFKLQDSAETARRGLDCYLYSFLTDTAFFKSHEESLL
GLKSWGFNVSPGWKKVQTIDEVLEFIHEWEEKRLTLPLATDGIVVKINSFEQQRELGFTA
KSPRWAISFKYKAENKPAVLRMVTYQVGRTGAVTPVANLCDISERALPYNKVKGVHLSGT
RVKRATLHNANELLRLGIEIGDTVFVEKSGEIIPKITGVDISQREKYPTEPLIFPTHCPE
CNSELQRNEGEVAFFCPNDSHCPPQLKGRIEHFIHRKAMNIESLGEGKIELLFDLDLVRT
PADLYDLTPETLLGLEKNILNEETGKVKKISFREKTVENILNGIALSKTIPFKNVLFALG
IRFVGATVAEKLAAYFKSMNALRLATYDQLIAVPEIGGRIAESIASYFDVPENQQLVARL
QAAGIQMESDEKPVELESDMLEGKTFVISGVFENFERDDLKLKIEVNGGRVLSGVSGKLN
YLLAGANMGPAKLEKARKLGVTILSEEEFLAMIENK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagaacagcaaatacaggagcttgtagacaaactgcagcatttgaactataaa
tattatcaggataatgtttccgaagtctcggattttgaatttgataagctgctgaaacag
ttaaaggagctggaagatcagtatcctgaacttcggcaggaagattctccaacattgcgg
gtaggcggcacgattacgaaaaacttcaatacggtttaccatcgctatcccatgttgtcg
ctcgacaacacttataatgaacaagagttgcggaatttcgatgaccgtgtgcgccgtgga
ttggatggagagccttatgaatacatttgcgagctgaaatttgatggcatttccctcagt
ttcacgtacgaaaacggcgtgctcgtgcgtggcgtgacgcgtggcgatggcacgcgcggg
gatgagattactaacaatgtaaaaaccattcgttcactgccgttaagggttaaggctgag
aatgttccaccggtttttgagattcgcggcgaaggttttatgcccattacttcgttccaa
aaactaaatgaggaaatggacactttgggtgaaaatcaatatgctaaccctaggaatgcg
gcttccggatcatttaaattgcaggattctgcggaaaccgcacggcgtggactggattgt
tatctctactcatttttaaccgatacagcatttttcaaaagccacgaggaaagcttgctg
gggcttaaatcatggggttttaatgtttcccccggctggaaaaaagtgcagaccattgat
gaagtcctggaatttatccatgaatgggaagaaaaacggctgacgcttccgcttgcaacg
gacggaattgtggtcaaaatcaattcttttgaacagcagcgtgagcttggtttcacagcc
aaaagcccccgctgggccatttcatttaaatataaagctgaaaataaacccgccgtcctg
cgcatggtcacgtatcaggtcgggcgcacgggagccgttacgccggttgcgaacctttgc
gacattagcgaacgtgcgttgccctataataaagtaaaaggcgttcacctgtcgggaacg
cgcgtgaagcgggcaacattgcacaatgcgaatgagctgctaaggctgggcattgaaatc
ggtgacaccgtttttgttgaaaaaagcggtgagatcattccgaaaatcaccggcgtagac
atttcacagcgcgaaaaatatccgacggaaccgcttattttcccaacacattgtcccgaa
tgcaactccgaattacaacgaaatgaaggcgaagtcgcgtttttctgtcccaacgacagc
cactgcccgccgcagctgaaaggccggatcgagcatttcattcaccgcaaagcgatgaac
attgaaagtctgggcgaaggaaaaatagaactgctcttcgatctcgatctcgtgcgcacg
ccagccgatttgtatgatttaacccctgaaacgcttcttggtcttgaaaaaaatatcctg
aatgaggaaacagggaaggtcaaaaagatcagctttcgcgaaaaaacggtggaaaacatt
ctgaacggcatcgcactttcgaaaacgattccttttaaaaatgtgcttttcgcgctggga
atccggtttgtaggcgcaacggtggctgaaaagctcgctgcttatttcaaatccatgaat
gcattgcggttggccacttatgaccaattgattgccgttccggaaattggtggacgcatt
gcggaaagcattgcttcttattttgatgtgcctgaaaatcagcagttagtggcacgttta
caggctgcgggcattcaaatggaaagcgatgaaaagcctgttgagctggaaagtgacatg
ttggaaggtaaaactttcgtgatatcgggcgtttttgaaaattttgaaagggatgatctc
aaattgaagatcgaagtgaatggcggacgggtgctaagtggcgtttcgggaaaactgaat
tacttgctggctggtgcaaatatggggcctgccaagttggaaaaagcccggaaactgggc
gttaccattctgagcgaggaagaatttttagcgatgatcgagaataaatga
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