Dolichospermum flos-aquae: HGD76_22610
Help
Entry
HGD76_22610 CDS
T06652
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dfs
Dolichospermum flos-aquae
Pathway
dfs03030
DNA replication
dfs03410
Base excision repair
dfs03420
Nucleotide excision repair
dfs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HGD76_22610 (ligA)
03410 Base excision repair
HGD76_22610 (ligA)
03420 Nucleotide excision repair
HGD76_22610 (ligA)
03430 Mismatch repair
HGD76_22610 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dfs03032
]
HGD76_22610 (ligA)
03400 DNA repair and recombination proteins [BR:
dfs03400
]
HGD76_22610 (ligA)
Enzymes [BR:
dfs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HGD76_22610 (ligA)
DNA replication proteins [BR:
dfs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HGD76_22610 (ligA)
DNA repair and recombination proteins [BR:
dfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HGD76_22610 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HGD76_22610 (ligA)
MMR (mismatch excision repair)
DNA ligase
HGD76_22610 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HGD76_22610 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
RNA_pol_A_CTD
RCDG1
Motif
Other DBs
NCBI-ProteinID:
QJB46559
UniProt:
A0A6H2C6J0
LinkDB
All DBs
Position
complement(4723883..4725928)
Genome browser
AA seq
681 aa
AA seq
DB search
MMSTQPETKRIEELRCLLQKAGYAYYVLDAPIMEDTVYDRLYRELQELETNNPELITADS
PTQRVGERPATHFTSVRHNIPLYSLENAFNIEELQNWDQRWRRHSPTQYNDGDIEYVSEL
KIDGAALALTYENGVLVRGTTRGDGVMGEEITQNVRTIRSIPLRLNFDGLENIAKVEVRG
EVFLPLQVFKEINQKRQKAGEQIFANPRNAVAGTLRQLDSRIVAQRQLDFFAYTLHITGL
DDSSIANTQWEALELLQRLGFRVDTNHKLCHSIAEVVEYYQYWDTERLNSPYMTDGVVVK
LNTFRLQEQLGFTQKFPRWAIALKYPAEEAPTRVEKITVNVGRTGALTPLAEMLPVQLAG
TTVSRATLHNSDRIEQLDIRIGDTVIVRKAGEIIPEVVRVIKELRPVNTQPFIMPSHCPA
CGQLVVRETGEAVTRCINASCPAILKGEIEHWVSRDALDIKGVGEKLVYQLVDKGLVHSV
ADLYDLKIEDLCALERMGKKSAEKLINAIAQSKTQPWARVLYGLGIRHVGSVNAQLLTEK
FTTVEELTAARQSDIAGVYGIGAEIAQSVYQWFRTPANQSLISRIQAIGLELANSAEAQA
VGEINQKFAGKTFVVTGTLPTLKRDEAKALIQKSGGKITDSISRKTDFLVVGADAGSKLE
KARKLEISQLTEAQLLAMLTE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcaactcaacctgaaaccaaacgtatagaagaactacgatgtttgctacaaaaa
gcaggctacgcttattatgttctagatgcgccaattatggaagatacggtttatgatcgg
ctgtatcgagagttgcaagaattagaaactaacaatcccgaattaattactgctgatagt
ccgactcagcgcgttggggaaagacctgctacccattttacctcagtccgtcataatatc
cccctgtacagcctggaaaatgcgtttaatattgaagaattgcaaaattgggatcaacgg
tggcggcgacactcaccaactcagtataatgacggagatatagaatatgtatctgagttg
aaaattgatggtgctgctttagcattaacttacgaaaatggagttttagtcagggggaca
acgagaggagatggggtaatgggtgaagagattacccaaaatgtgagaactattcgctca
attcccctgcgtttgaattttgacggtttagaaaatattgctaaagtggaagtacgggga
gaagtgtttctacctttacaggtgtttaaagaaattaatcagaaaagacaaaaagctggt
gaacaaatatttgctaacccgcgcaatgctgtagcaggtacgctcagacaattagattct
cgcattgtcgcacaacgacagttagatttctttgcttatactttgcatattacggggttg
gatgattccagtattgccaatacccaatgggaagctttggaattattgcaaagacttggt
tttcgagttgataccaaccataaactctgccattctattgctgaagttgttgaatattac
caatattgggatacagaacggctgaattctccctatatgacagatggtgttgtcgtcaaa
ttaaatacttttagactgcaagaacaattggggtttacacagaagtttccccgctgggct
atagccttaaaatatcccgccgaagaagccccaacccgtgtagaaaaaatcactgttaac
gttggcagaaccggggcattaactcccttagcggaaatgttgcccgtacaattagcgggg
acaacagtttcccgtgctaccttacataatagcgatcgcattgaacaattagacatccgt
attggcgacaccgtgattgttcgcaaagccggggaaatcattcccgaagtagtccgggta
atcaaagaactacgtcccgttaatacccaacctttcattatgccttcccattgtccagcc
tgtggacagctagtagtcagggaaactggagaagcagttactagatgtataaatgcttcc
tgtcccgccattctcaagggtgaaattgaacattgggtcagtcgtgacgcgttagatatt
aaaggtgtaggcgaaaagttggtgtatcaacttgtagataaaggcttagtccattccgtg
gctgatttatatgacttgaaaatagaagacttgtgtgcattagaacgcatgggaaaaaaa
tcggcggaaaaattgatcaatgcgatcgctcaatcaaaaactcaaccctgggctagagta
ttatatggtttaggcatccgtcacgttggcagcgtcaacgcccaattactcacagagaag
tttaccaccgtcgaagagttaacagccgccagacaatcggatattgcaggtgtttatggt
atcggtgcagaaatcgcccaatcagtctatcaatggtttcgtactccagccaatcaaagc
ttaatttcccgtatccaggctattggtttagaattagcaaacagcgccgaagctcaagct
gtaggcgaaattaatcaaaaatttgctggtaaaacctttgtcgttactggcacattacca
actttaaaacgcgatgaagccaaagctttaattcaaaaatcaggcggtaaaattactgat
tcaattagcagaaaaacagactttttagttgtaggtgcagatgccggttctaagttagag
aaagcgcggaagttggaaattagccaattgactgaggcgcaattattggcaatgctgaca
gaatag
DBGET
integrated database retrieval system
