Deinococcus grandis: DEGR_14940
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Entry
DEGR_14940 CDS
T06640
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dga
Deinococcus grandis
Pathway
dga03030
DNA replication
dga03410
Base excision repair
dga03420
Nucleotide excision repair
dga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DEGR_14940 (ligA)
03410 Base excision repair
DEGR_14940 (ligA)
03420 Nucleotide excision repair
DEGR_14940 (ligA)
03430 Mismatch repair
DEGR_14940 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dga03032
]
DEGR_14940 (ligA)
03400 DNA repair and recombination proteins [BR:
dga03400
]
DEGR_14940 (ligA)
Enzymes [BR:
dga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DEGR_14940 (ligA)
DNA replication proteins [BR:
dga03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DEGR_14940 (ligA)
DNA repair and recombination proteins [BR:
dga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DEGR_14940 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DEGR_14940 (ligA)
MMR (mismatch excision repair)
DNA ligase
DEGR_14940 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DEGR_14940 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
BRCT_2
5_3_exonuc
3HBD
Motif
Other DBs
NCBI-ProteinID:
BBN94761
LinkDB
All DBs
Position
1553217..1555238
Genome browser
AA seq
673 aa
AA seq
DB search
MTTEFDRYLALRAEVAAHNRAYYEQDAPSIPDDTYDALARELRNLEAAHPDWAAQAGADS
PAQTVGGAPAAAFQPVNHPTPMTSLDNAFDDAELRDWQEKLARALGLPAEHDDFTFTGEL
KIDGLSVNLYYLDGELQWAATRGNGVTGEIVTAQVLTVPGIPTTLPGLRGELEVRGEVYM
SRADFAAFNAQAEELGTPLLKNPRNGAAGALRQKDPEVTRSRNLKAILYALGKRDGVPAR
TQGEVLAWLREQGFPTSEHSEELHGLAAAADYHARMTAARSAFEFDADGTVLKLNDLRAQ
EEAGFTSRAPRWAIAYKFPVEEVETTLEAISVNVGRTGKLAPLAHLAPRLIEGSTVSRAT
LHNEDFIRDLDLRIGDTVVVRKSGGVIPQIMRVLTEKRPADAQPFEFPTHCPECVHEVTR
AEGDANTYCPNPACPSQAFERIRYFVSRGAMDVRGIGEKLVAQLIETGLVRDAADLYALS
AEQLGSLDRSGEKKAQNILSQLDASRSKPLWRLVNALGMNHVGERNAQALARAFGTLDAL
LAATPEQIENVPGLGGVIAQSVTASLADPSMRDLIARLRDHGVNPQEEQVTRGEQLQGLN
FVITGTLGRPRDAIKAQLEQAGGRVTGSVTKKTSYLIAGEEAGSKLARAQELGVTVLDEA
ALDELLAARGVTN
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccgagtttgaccgttacctggccctgcgggccgaggtggccgcccacaaccgc
gcctactacgagcaggacgcccccagcattcccgacgacacctacgacgccctggcgcgc
gaactgcggaacctggaagcggcgcacccggactgggccgcgcaggccggtgcggacagt
cccgcgcagacggtcggtggcgcgcccgccgccgcgttccagcccgtgaatcaccccacg
cccatgaccagcctggacaatgcattcgacgacgcggagctgcgtgactggcaggagaaa
ctggcccgcgccctaggcctcccggcggagcacgacgacttcacgttcacgggcgaactg
aagatcgacgggctgagcgtgaacctctactacctggacggcgagttgcagtgggcggcc
acacgcggcaacggcgtgacgggcgagatcgtcaccgcgcaggtgctgacggtgcccggc
attcccaccacgctgcccggtctgcgcggggaactggaggtgcgcggcgaggtgtacatg
agccgcgcggacttcgcggcgttcaacgcgcaggccgaggaactcggcacgccgctgctg
aagaacccccgcaacggcgcggcgggcgcgctgcgccagaaggacccggaggtgacccgc
agccggaacctgaaggcgatcctgtacgcgctgggcaaacgcgacggggtgcccgcccgc
acgcagggtgaggtgctggcgtggctccgtgaacagggctttcccaccagcgagcacagc
gaggaactgcacggcctggccgccgccgccgactaccacgcccgcatgaccgccgcgcgc
agcgccttcgagttcgacgcggacggcaccgtcctgaaactgaacgacctgcgcgcgcag
gaggaggcgggcttcaccagccgcgcgccccggtgggccatcgcgtacaagttcccggtg
gaggaggtcgagacaaccctggaggccatcagcgtgaacgtgggccgcaccgggaagctc
gcgccgctggcgcacctcgcgccgcgcctgatcgagggcagcaccgtcagccgcgccacc
ctgcacaacgaggacttcatccgcgacctggacctgcggatcggggacacggtcgtcgtg
cgcaagtccggcggcgtgatcccgcagatcatgcgcgtcctgaccgaaaagcgccctgcg
gatgcccagcccttcgagttccccacccactgccccgagtgcgtccacgaggtcacgcgc
gccgagggcgacgcgaacacctactgcccgaaccccgcctgcccctcgcaggccttcgag
cgcatccggtacttcgtgtcgcgcggcgcgatggacgtgcgcggcatcggcgagaaactg
gtcgcgcagctcatcgagaccggcctcgtgcgcgacgccgccgacctctacgccctgagt
gccgagcagctgggttcgctggaccgcagcggcgagaagaaggcgcagaacatcctgtcc
cagctggacgccagccggagtaagcccctgtggcgactcgtgaacgcgctgggcatgaac
cacgtcggggaacgcaacgcccaggcgctcgcccgcgccttcggcacgctcgacgccctg
ctcgccgcgacgcccgagcagatcgagaacgtgcccggcctgggcggcgtgatcgcccag
agcgtcaccgcgtccctggccgaccccagcatgcgggacctgatcgcccgcctgcgcgac
cacggcgtgaacccccaggaggaacaggtcacgcgcggcgaacagctgcagggcctgaac
ttcgtgatcaccggcacgctgggccgcccccgcgacgccatcaaggcgcagctggaacag
gccggggggcgcgtcacgggcagcgtcacgaagaagaccagctacctgatcgccggggag
gaggcgggcagcaaactggcccgcgcgcaggaactcggcgtgaccgtgctggacgaggcg
gccctggacgagctgctcgccgcgcgcggcgtgaccaactga
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