Deinococcus geothermalis: Dgeo_0696
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Entry
Dgeo_0696 CDS
T00353
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dge
Deinococcus geothermalis
Pathway
dge03030
DNA replication
dge03410
Base excision repair
dge03420
Nucleotide excision repair
dge03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dgeo_0696
03410 Base excision repair
Dgeo_0696
03420 Nucleotide excision repair
Dgeo_0696
03430 Mismatch repair
Dgeo_0696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dge03032
]
Dgeo_0696
03400 DNA repair and recombination proteins [BR:
dge03400
]
Dgeo_0696
Enzymes [BR:
dge01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dgeo_0696
DNA replication proteins [BR:
dge03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dgeo_0696
DNA repair and recombination proteins [BR:
dge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dgeo_0696
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dgeo_0696
MMR (mismatch excision repair)
DNA ligase
Dgeo_0696
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dgeo_0696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
BRCT_2
Fur_reg_FbpA
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
ABF44998
UniProt:
Q1J0I6
LinkDB
All DBs
Position
755915..757969
Genome browser
AA seq
684 aa
AA seq
DB search
MRGRCYASTMSQPASQVSATLEHYLALRAEIERHNRAYYELDAPEIPDDEYDRLVRELRA
LEAAHPEWVAENSPAQTVGGAPSSAFLPVEHPTPMTSLDNVFSDEELAEWQEKLARALNL
PPDHDGFTYTGELKIDGLSVNLYYADGVLQWAATRGNGRVGEMVTEQVLTIPGIPRALPG
LTGELEVRGEVYLSRADFAAFNARAEELGLPLLKNPRNGAAGALRQKDPEVTRTRHLKAL
FYSLGKHDGVPVRTQGEVLAWLAEQGFPTSRYSETFTGLQAAADYHRRMTAQRAQFEFDA
DGTVLKLDSLALQAEAGSTSRAPRWAVAYKFPVEEVETVLESITVNVGRTGKLAPLAHLS
PRLIEGSTVSKATLHNEDYIRDLDLRIGDTVVVRKSGGVIPQIMRVVLEKRPPDAAPYRF
PTHCPECGHEVVRAEGDANTYCPNPACPAQQFERLRYFVSRGAMDVRGVGEKLIEQLLAT
GLVHDAADLYQLTAEQLASLERSGEKKAANILAQLEASKTRPLWRLINALGINHVGERNA
QALARAFGTLDALLAATPESIEAVPGLGRTIAQSVSAALADPSMQDLIRRLRERGLKPVE
ETAPRGDALAGLSFVLTGTLSRPRDEIKARLESAGARVTGSVTKKTSYLIAGEEAGSKLD
RARELGIPVLDEAGLGALLEERGV
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgcggggccggtgctacgcttccaccatgagtcagcccgcctcccaggtgtccgcaacc
ctggaacactacctggccctgcgcgccgagatcgaacgccacaaccgcgcctactacgag
ctggacgctccggagattcctgacgacgagtacgaccgcctcgttcgtgagctgcgtgcc
cttgaggcagcgcatcccgaatgggtggcggagaacagccccgcgcagacggtgggcggc
gcgcccagttcggccttcttgccggtggaacatcccacacccatgaccagcctcgacaac
gtcttttcagacgaggagctggccgagtggcaggagaagctggcgcgcgcactgaatttg
cctcccgaccacgacggcttcacctacaccggtgagctgaagatcgatggcctcagcgtg
aacctctattacgcggacggcgtcttgcagtgggccgcgacccggggcaatggccgggtc
ggtgagatggtaaccgagcaggtgctcacgatccccggcattccccgcgcgctgccgggc
ctgacgggcgagctggaggtgcgcggcgaggtgtatctcagccgagccgattttgcggcc
ttcaacgcccgcgctgaggagctgggcctacctctgctgaaaaacccgcgcaacggggcc
gccggggcgctgcgccagaaagacccagaggtgacgcgcacgcggcatctgaaagctctc
ttctacagcctcggcaagcatgacggtgttccggtacggactcagggcgaggtgctggcc
tggctcgccgagcaggggtttcccaccagccgctacagcgagaccttcaccggcctccag
gctgccgcggactatcaccgccgcatgacggcgcagcgtgcgcagttcgagtttgacgcc
gacggcacggtgctgaaactggactcgctggcgctgcaggctgaggcgggatcgaccagc
cgcgctccccgctgggccgtcgcctacaagttcccggtcgaggaggtcgagacggtgctg
gagagcatcacggtgaatgtgggccgtaccggcaaactcgcgcccctcgcccatctgtcg
ccccggctgatcgagggcagcaccgtcagcaaggcgactcttcacaacgaggactatatc
cgcgacctggatttgcgaattggcgacacggtggtggttcgcaaatcgggcggcgtgatt
ccccagattatgcgggtggttctcgaaaagcgcccgccagacgctgctccctaccgcttt
cccacccactgcccggagtgtggtcacgaggtggtgcgcgcggagggcgacgccaacacc
tactgccccaaccctgcttgccccgcccaacagtttgagcgcctgcgctatttcgtcagc
cgaggcgcgatggacgtgcgcggggtcggagagaagctgatcgagcagctcctcgcaacc
ggactggtgcacgacgccgctgatctctaccagctgaccgccgagcagctcgcaagcttg
gaacgcagcggcgagaagaaggccgcgaatatcctcgcccaactggaagccagcaaaacc
cggcccctgtggcgcctgatcaatgcgctgggaatcaaccacgtgggggaacgcaacgcc
caggcgctcgcccgcgcgttcggcacgctggacgctctcctggccgccacgccggagagc
atcgaggcggtgccgggtttgggccgcaccattgcccagagcgtgagcgccgccctggct
gaccccagcatgcaggatctgattcgccgcctgcgcgagcgcggtctcaagccggtggag
gagacagcaccgcgtggagacgccttggcagggcttagtttcgtgctgaccggcaccctc
tctcgcccgcgcgacgagatcaaggcgcggctggagtccgctggagcgcgcgttaccggc
agcgtcaccaagaagaccagctacctcatcgcgggtgaggaggccggcagcaaacttgac
cgcgcccgtgaactggggattccagtgctggacgaggcggggctgggggcgctgctggag
gaaaggggggtgtag
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