Dermatobacter hominis: LH044_06220
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Entry
LH044_06220 CDS
T09351
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dhi
Dermatobacter hominis
Pathway
dhi03030
DNA replication
dhi03410
Base excision repair
dhi03420
Nucleotide excision repair
dhi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH044_06220 (ligA)
03410 Base excision repair
LH044_06220 (ligA)
03420 Nucleotide excision repair
LH044_06220 (ligA)
03430 Mismatch repair
LH044_06220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dhi03032
]
LH044_06220 (ligA)
03400 DNA repair and recombination proteins [BR:
dhi03400
]
LH044_06220 (ligA)
Enzymes [BR:
dhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LH044_06220 (ligA)
DNA replication proteins [BR:
dhi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LH044_06220 (ligA)
DNA repair and recombination proteins [BR:
dhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LH044_06220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH044_06220 (ligA)
MMR (mismatch excision repair)
DNA ligase
LH044_06220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LH044_06220 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Auto_anti-p27
BRCT_2
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
UDY37129
LinkDB
All DBs
Position
complement(1338845..1340983)
Genome browser
AA seq
712 aa
AA seq
DB search
MAAAKDAPPTAGASPDEGGALPAEAIAEMDPAGRIDDLRDQIRAHNRSYYELDAPTIPDA
DYDLLVRELQELEALHPDLITPDSPTQQVGGPTSAQFAPVTHAVRMMSLDNAMDRDELRD
WGDRTARKLASLGLEGAVRYVCELKIDGLAMSLRYEGGRFVQAATRGDGRTGEDVTANVA
TIGAIPDRLADGAPEVLEARGEVYLPIDAFQRLQAQTIAENEAAEAAGRKGRPVPVNPRN
AGAGSLRQKDASVTASRGLSFWCYQLGEIVGAEAPPTHSGALQWLRELGLPVNPETKVFD
SLEEVYDFCAHWVEHRHDLPYEIDGVVVKVDDLAVQAALGTTSKAPRWAIAYKLPPEERT
TVLQDIQVSIGRTGKATPFAVLEPVFVGGSTVGLATLHNEDQVKVKDVRPGDTVIVRKAG
DVIPEVVGPVLELRPKGLPEWEFPKECPSCGGPLVREEGEAQTRCVNPDCPQKRLARITH
FGSRGAMDIEGLGEQQVQLFLELGLLRDVADVYSLDYDRILELPRYGETSVRNLRSAIEA
SKQRPLANLLFGLNIVHLGQAGGEALAEGLGSLQAIMDASVDDIAAVDGAGPIVAASVHA
FFQDPANRELVERLIAAGVNTEGPERSVLPQTLAGRSIVVTGTVPGYSREDAEAAIKARG
GKSPGSVSKKTFAVVVGEEPGASKVTKAESLGIPMVEADGFEALLTTGELPG
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtggccgcagcgaaggacgccccaccgaccgccggtgcctcgcccgacgagggcggcgcc
ctgcccgccgaggcgatcgccgagatggacccggccggtcgcatcgacgacctgcgcgac
cagatccgggcgcacaaccgcagctactacgagctcgacgcgcccacgatccccgacgcc
gactacgacctgctcgtccgggagctccaggagctcgaggcgctccaccccgacctgatc
acgcccgacagccccacccagcaggtgggcgggccgacctcggcccagttcgcaccggtc
acccacgcagtgcggatgatgagcctcgacaacgcgatggaccgcgacgagctgcgcgac
tggggcgaccgcaccgcccgcaagctggcgtcgctcgggctcgagggcgcggtccgctac
gtctgcgagctcaagatcgacggcctggccatgtcgctccgctacgagggcggtcggttc
gtgcaggccgccacccgcggcgacggccgcacgggcgaggacgtgaccgccaacgtcgcc
accatcggggccatcccggaccggctggccgacggcgcgcccgaggtgctcgaggcgcgg
ggcgaggtgtacctgccgatcgatgcgttccagcgcctgcaggcgcagacgatcgcggag
aacgaggcggccgaggccgcggggcgcaagggccggccggtgccggtcaacccccgcaac
gccggcgccggctcgctccgccagaaggacgcatcggtgaccgcgtcgcgcggtctgtcg
ttctggtgctaccagctcggcgagatcgtcggcgcagaggcgccgcccacgcactcgggc
gcgctgcagtggctccgcgagctcggcctgccggtgaaccccgagaccaaggtgttcgac
tcgctcgaggaggtctacgacttctgcgcccactgggtcgagcaccgccacgacctcccc
tacgagatcgacggcgtggtggtgaaggtcgacgacctcgccgtgcaggcggcgctcggg
accacctccaaagcgccgcgctgggcgatcgcgtacaagctgccgcccgaggagcgcacg
acggtcctccaggacatccaggtgtcgatcggccgcaccggcaaggcgacgccgttcgcc
gtgctcgagccggtcttcgtcggcggctcgacggtcgggctggccacgctccacaacgag
gaccaggtcaaggtcaaggacgtccgccccggcgacacggtgatcgtgcgcaaggcgggc
gacgtcatccccgaggtcgtcggacccgtgctcgagctccgcccgaagggcctgcccgag
tgggagttcccgaaggagtgcccgtcgtgcggcggaccgctggtgcgcgaggagggcgag
gcccagacgcgctgcgtgaacccggactgcccgcagaagcgcctggcccggatcacgcac
ttcggctcccgcggcgccatggacatcgagggcctcggcgagcagcaggtgcagctgttc
ctcgagctcggcctcctgcgcgacgtcgccgacgtctactcgctcgactacgaccgcatc
ctcgaactgccccgctacggcgagacgtcggtgcggaacctccggagcgcgatcgaggcg
tcgaagcagcggccgctcgccaacctgctcttcggcctcaacatcgtgcacctcggccag
gcggggggagaggcgctcgccgaggggctcggcagcctgcaggcgatcatggacgcgtcg
gtcgacgacatcgccgcagtcgacggcgcgggcccgatcgtggcggcctcggtccacgcg
ttcttccaggacccggccaaccgggagctggtcgagcggctcatcgcggcgggcgtcaac
accgaggggcccgagcggtcggtgctcccccagacgctggccgggcgcagcatcgtggtc
accggcacggtcccgggctacagccgtgaggacgccgaggccgcgatcaaggcccggggc
ggcaagtcgccgggcagcgtgtccaagaagacgttcgccgtggtcgtgggcgaggagccc
ggtgcgtccaaggtgaccaaggcggagtcgctcggcatcccgatggtggaggccgacggc
ttcgaggcgctgctgacgaccggcgagctccccggatga
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