Dissulfurimicrobium hydrothermale: LGS26_09485
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Entry
LGS26_09485 CDS
T07882
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dhr
Dissulfurimicrobium hydrothermale
Pathway
dhr03030
DNA replication
dhr03410
Base excision repair
dhr03420
Nucleotide excision repair
dhr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGS26_09485 (ligA)
03410 Base excision repair
LGS26_09485 (ligA)
03420 Nucleotide excision repair
LGS26_09485 (ligA)
03430 Mismatch repair
LGS26_09485 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dhr03032
]
LGS26_09485 (ligA)
03400 DNA repair and recombination proteins [BR:
dhr03400
]
LGS26_09485 (ligA)
Enzymes [BR:
dhr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LGS26_09485 (ligA)
DNA replication proteins [BR:
dhr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LGS26_09485 (ligA)
DNA repair and recombination proteins [BR:
dhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LGS26_09485 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGS26_09485 (ligA)
MMR (mismatch excision repair)
DNA ligase
LGS26_09485 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LGS26_09485 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Auto_anti-p27
Zn_ribbon_RlmA
Motif
Other DBs
NCBI-ProteinID:
UKL14653
LinkDB
All DBs
Position
1991749..1993764
Genome browser
AA seq
671 aa
AA seq
DB search
MDKDILERIGRLRQEINYHNYRYYVLDQPIISDEDYDALMHELIDLETRYPEAVTPDSPT
QRIGAQPSDKFATAHHTVPMLSLDDAFSEGDVIEFDRRIRRFLGTEKEIEYTVEPKMDGL
AIELVYENGIFILGSTRGDGYIGEDVTNNIRTVRAVPLKLIGHEVPLPDRLEVRGEIFIN
KDGFNALNEARKARGEPLFANPRNAAAGSLRQLDPAITASRPLDVFFYGVGIVKGRTFKT
QWEILSTLKKWGLKVNPLAEKITGIEAAIRYHRRIGEKRDTLSYEIDGIVIKVNSLELQT
RLGEKAKSPRWALAYKFEAAQAVTVIKDIQLSVGRTGAVTPIAIMAPVRVGGVMVSRATL
HNEDEIRRKDIRIGDWVIIKRAGDVIPEVVRPLIERRTGAERIFEMSSTCPVCGSRLVKR
PEEAVWRCPNPDCFPRLVKQLVHFAGKGSMDIDGLGPKVAEQMITAGLVREVADLYTLKL
SDLTSLERFAEKSARNLLAAIEKSKKTTLARFIYALGIRHVGETTAQVLANSFTSIKQII
DANEMKLTSVEGIGPEAASSIRTWFSDKKNRVLVERLIGSGITFSNSGTTGGPSLEGKTF
VFTGKLSKFTRDEAKMLVTRLGGRTASGVSKGTSYLVAGENPGSKFKKAMELGIKIINED
EFLELVQKTHF
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atcgacaaggatatccttgaacgcataggcagattaagacaagagatcaactaccacaac
taccgctactatgtgcttgatcagcctatcataagcgacgaagactatgacgcccttatg
cacgagctcatagaccttgaaaccagatatcctgaggcggtgacaccagactcacccacc
caaaggataggggcgcagccgtctgacaaatttgccacggcccatcatacagtcccgatg
cttagccttgacgatgcattcagcgagggcgacgtgatcgagttcgacagaaggattagg
aggtttctggggacagagaaagagatcgaatatacagtcgaacctaagatggacggcctc
gcaatcgaactagtctatgaaaacggcatctttatcctcggctcaaccaggggagatggc
tacataggcgaagacgtaaccaataatatacgaacggtcagggcggtgcctttgaaactg
attgggcacgaggtgcccctgccggatcgactcgaggtgcgaggggagatatttataaac
aaagacggctttaatgcattaaatgaggcacgaaaggccagaggtgaaccattgtttgcc
aaccctagaaacgcagcggctggctctttgcgtcaacttgaccctgccataaccgcatca
cgcccgctcgacgtatttttctatggcgttggaatagtaaagggccgcacattcaagaca
caatgggagatactctctaccctcaaaaaatgggggctcaaggtaaatccgctggcggag
aaaataacaggtatagaggctgccatacgctatcaccgacgcatcggagagaagagggac
accctgagctatgagatagacggcatcgtgatcaaggtaaacagccttgaactccagacc
aggctcggagaaaaggcaaaaagtccgcgttgggcgctggcttacaagttcgaagctgcc
caagctgtgactgtgatcaaggacatccaattaagcgtagggcgcacaggcgctgtcaca
ccgatagccataatggcacctgtacgggtaggtggggtgatggtaagtcgcgctacccta
cacaatgaagacgaaatacgcagaaaagacatacgtataggcgactgggttataataaaa
cgcgccggcgacgtaatcccggaggtcgtccgcccgcttatagaaagaaggaccggcgct
gagcggatattcgagatgtcctcgacctgtcctgtttgtggttcaaggcttgtcaaaaga
ccagaggaggcagtatggcgttgtcctaatcctgactgcttcccgagactcgtaaaacag
cttgtacactttgcaggcaagggttcgatggatatagacgggctcggcccaaaggtggcg
gaacagatgataacggccgggcttgtcagagaggtcgccgacctctatacgctcaagctg
agcgaccttacctcgcttgaacgatttgctgaaaaatcagcgcgaaatctcttggcggcc
atagaaaagagcaagaagaccacactcgcacgtttcatctacgcccttggcataagacat
gtaggcgagaccacggcccaggtgcttgcaaatagctttacttcaatcaaacaaattatt
gatgcaaatgaaatgaaactgacgtccgtggaaggcattgggcccgaggcggcatccagc
ataaggacgtggttttccgacaaaaaaaaccgcgtgcttgtcgaacggctaataggctcc
ggaataacgttctcaaactcaggcacgacaggaggaccctcgcttgagggaaagaccttt
gtctttacaggcaaactatccaaatttaccagggatgaggcaaagatgctggtgacaagg
cttggcgggcgaaccgcatcgggagtaagcaaaggcacctcctatcttgtggccggcgag
aatcctggatcaaagttcaaaaaggcaatggagctcgggatcaaaattataaatgaggat
gagtttcttgagcttgtgcagaagacacatttttaa
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