Dolichospermum heterosporum: NG743_00415
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Entry
NG743_00415 CDS
T08533
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dht
Dolichospermum heterosporum
Pathway
dht03030
DNA replication
dht03410
Base excision repair
dht03420
Nucleotide excision repair
dht03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NG743_00415 (ligA)
03410 Base excision repair
NG743_00415 (ligA)
03420 Nucleotide excision repair
NG743_00415 (ligA)
03430 Mismatch repair
NG743_00415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dht03032
]
NG743_00415 (ligA)
03400 DNA repair and recombination proteins [BR:
dht03400
]
NG743_00415 (ligA)
Enzymes [BR:
dht01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NG743_00415 (ligA)
DNA replication proteins [BR:
dht03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NG743_00415 (ligA)
DNA repair and recombination proteins [BR:
dht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NG743_00415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NG743_00415 (ligA)
MMR (mismatch excision repair)
DNA ligase
NG743_00415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NG743_00415 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
TP_methylase
DUF3701
DUF3150
RCDG1
Flu_PB2_1st
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
UUO18076
LinkDB
All DBs
Position
complement(93324..95369)
Genome browser
AA seq
681 aa
AA seq
DB search
MMSNQPEVKRIEELRRLLQQASYAYYVLDAPVMEDTVYDRLYRELQELETQNPELITPDS
PTQRVGDRPATHFTSVRHNIPLYSLENAFNIEELQSWDQRWRRYSPIQYNDGELEYVSEL
KIDGAALALTYENGFLVRGTTRGDGVMGEDITQNVRTIRSIPLRLHFDGLENIAKVEVRG
EAFLPLQVFKEINEKRQKAGEQLFANPRNAVAGTLRQLDSRIVAQRQLDFFAYTLHITGL
DDSSIANTQWEALELLQKMGFRVDTNHKLCHSIAEVAEYYQYWDTERLNSPYMTDGVVVK
LNMFRLQEQLGFTQKFPRWAIALKYPAEEAPTRVVKITVNVGRTGALTPLAEMLPVQLAG
TTVSRATLHNSDRIEQLDIRIGDTVIVRKAGEIIPEVVRVIKELRPADTQPFIMPSHCPV
CGQQVVRETGEAVTRCVNASCAAILKGEVEHWVSRDALDIKGVGEKLVYQLVDKGLIHSI
ADLYELTTDKLSALERMGQKSAEKLVKAIAQSKTQPWSRVLYGLGIRHVGSVNAQLLTEK
FTTVAELTAARQSDIAGVYGIGAEIAQSVYQWFRTPANQTLISRIQTIGLQLANSIETKA
AEKINQNFAGKTFVVTGTLPTLKRDEAKALIQKAGGKITDSVSKKTDFLVVGADAGSKLE
KAQNLGISQLTEAQLLIMLAE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcaaatcagccggaagtaaaacgtatagaagaattacgccgcttattgcaacaa
gctagttatgcctattatgttttagatgcgccagttatggaagatacggtttatgatcgg
ctgtatcgagagttgcaagaattagaaacacaaaatcccgaattaattactcctgatagt
ccaactcagcgtgttggcgatcgccctgccacccattttacttcagttcgtcacaatatt
cccctatatagcctggaaaatgccttcaatattgaagaattgcaaagttgggatcaacgg
tggcggcgatactcacccattcagtataatgacggagaactggaatatgtatctgagtta
aaaattgatggtgcagctttggctttgacttacgaaaatggcttcttagtcagggggaca
acgcgaggagatggggtaatgggtgaggatattacccaaaatgtcaggactattcgctca
attcccctccgtttgcattttgacgggttagaaaatattgctaaggtggaagtccgagga
gaagcattcttacctttacaggtatttaaggaaattaatgagaagagacaaaaggctgga
gaacagttattcgctaatccgcgcaacgctgtggcgggtacgctcaggcaactggattca
cggattgtagcacagcgacagttagatttctttgcttatactctgcatattacaggcttg
gatgattctagtattgccaatactcaatgggaagctttggaattgttgcaaaaaatgggt
tttcgagtggataccaatcataaactctgccattctatcgctgaagttgctgaatattac
caatattgggatacagaacggctgaattctccctatatgacggatggtgttgtcgttaaa
ttaaatatgtttagactccaagaacaattggggtttacacagaagtttccccgctgggct
atagccttaaaatatccggcggaagaagccccaacccgtgtagtaaaaatcactgtcaat
gtgggcagaactggggcattaactcctttagcggaaatgttgccagtacaattagcggga
acaactgtttctcgtgctaccttacataatagcgatcgcattgagcaattagatatccgc
attggcgacaccgtgattgttcgcaaagccggagaaatcattcccgaagttgtccgggtc
atcaaagaactacgtcccgctgatactcaacctttcattatgccttcccattgtcccgtc
tgtggtcaacaggtggtgagagaaacgggcgaagctgttactagatgtgtaaatgcttcc
tgtgcggcgattcttaaaggtgaggttgaacattgggtcagtcgtgacgctttagatatt
aaaggtgtgggagaaaagttggtgtatcaactcgtagacaagggtttaatacattccatt
gctgatttatatgaattgacaacagataaattatctgcgttagaacgcatgggacaaaaa
tcggcagaaaaattggtgaaggcgatcgcacaatcaaaaacccaaccctggtctagagta
ttatatggtttaggcatccgtcacgttggcagcgtcaacgcccaattactcaccgagaag
tttaccaccgtcgccgagttaacagccgccagacaatcagatattgcaggcgtttatggt
atcggtgcagaaatcgcccaatcagtctatcaatggtttcgcaccccagccaatcaaacc
ttaatctcccggattcagaccattggcttacaattagccaacagcatagaaaccaaagca
gcagagaaaattaatcaaaattttgctggtaaaacctttgtcgtcaccggcacattacca
accttaaaacgggatgaagccaaagccttaattcaaaaagcaggtggtaaaatcactgat
tcagttagcaaaaaaacagactttttagttgtgggtgcagatgccggttctaaactagaa
aaagcccagaatttaggaattagccaattgacagaggcacagttattaataatgctggca
gaatag
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