Diaphorobacter sp. MNS-0: K2L43_09235
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Entry
K2L43_09235 CDS
T10618
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dim Diaphorobacter sp. MNS-0
Pathway
dim03030
DNA replication
dim03410
Base excision repair
dim03420
Nucleotide excision repair
dim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K2L43_09235 (ligA)
03410 Base excision repair
K2L43_09235 (ligA)
03420 Nucleotide excision repair
K2L43_09235 (ligA)
03430 Mismatch repair
K2L43_09235 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dim03032
]
K2L43_09235 (ligA)
03400 DNA repair and recombination proteins [BR:
dim03400
]
K2L43_09235 (ligA)
Enzymes [BR:
dim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K2L43_09235 (ligA)
DNA replication proteins [BR:
dim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K2L43_09235 (ligA)
DNA repair and recombination proteins [BR:
dim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K2L43_09235 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K2L43_09235 (ligA)
MMR (mismatch excision repair)
DNA ligase
K2L43_09235 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K2L43_09235 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
DUF4796_N
BRCT_2
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QYY27275
LinkDB
All DBs
Position
1923032..1925227
Genome browser
AA seq
731 aa
AA seq
DB search
MTEQSDLFPAPAPKGSALVATKIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQQLQAL
EGAYPDLVTPDSPTQRVLGAVLDGLTPVRHRVPMLSIRTETDTEASGAKAFDARVRRELK
LPPDAPPVEYVAEPKFDGLAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLP
AGVPPVLEVRGEVYMRRADFDALNERQREKGDKTFVNPRNAAAGAVRQLDSGITAQRPLS
FFAYGLGEVTPAAEGGPDFGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAER
DALPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKL
TPVARLAPVFVGGVTVTNATLHNLFELRRKKVRVGDQVIVRRAGDVIPEVVGVVPAGAGL
AVLAGSDALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVREPGEVNHRC
SGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVEGHVIRTLPDLYRLGLSSLAQLD
RMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHFGRLDAIMDAGVEQL
LQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWDESEPAAAATLPLAGMTVVLTGT
LPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAGSKLAKAQELGIPVLDEDGLHAL
LRGTTPNAGGG
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacaatccgacctttttccggctcccgcgcccaaggggtctgcgctggtagct
acaaaaatcaaagcgcttcgcgagcagttgaaccgctgggcgcacgagtactacgtccag
gacacgccgagcgtgcccgatgccgagtatgaccgcgcgttccagcagctgcaggcgctg
gagggcgcttaccccgacctggtgacgcccgactcgcccacgcagcgcgtgctgggcgcg
gtgctggacgggctgacaccggtgcgccaccgcgtgcccatgctcagcatccgcactgaa
accgacacagaggccagcggcgctaaagccttcgacgcgcgcgtgcgccgcgaactgaag
ctgccgcccgatgcgccgccggtggaatacgtggccgaacccaagttcgacggcctggcg
atgagcctgcgctacgagggcgggcgcttggtgcaggccgccacgcgaggcgatggcgag
gtgggcgaggacgtgacccacaacgtgcgcaccatccgccagatccccctgagcctgccc
gccggcgtgccgccggtgctggaggtgcgcggggaggtctacatgcgccgcgcggacttc
gacgcactcaacgagcgccagcgcgagaagggcgacaagaccttcgtcaacccgcgcaac
gccgccgccggcgcggtgcgccagttggactcaggcatcaccgcgcagcggccgctgtcg
ttcttcgcctacgggctgggcgaggtcacgcctgccgccgagggcgggcccgacttcggc
acgcacttcggcatgctgcagcagctcaaggaatggggatttccggtcgcagcccaggtg
cagattgcgcaaggcgcttctgaactcatagcgttccatcagcgtgtgggggccgaacgg
gacgcgctgccctacgacatcgacggcgtggtctacaaggtcaacagcctggcactgcag
cgccagctgggctttgtgacgcgcgagccgcgctgggccgtggcccacaagtacccggcc
caggagatggtcacgcgcgtggaaggcatcgacgtgcaggtgggccgcacgggcaagctg
acgcccgtggcgcgactcgcgccggtgttcgtgggcggcgtcacggtgaccaatgccacg
ctgcacaacctgttcgagctgcgccgcaagaaagtgcgcgtgggcgaccaggtgatcgtg
cgccgcgcgggcgacgtgattcccgaggtggtgggcgtggtgccggcgggcgcaggcctg
gcagtgctggcggggtccgacgcgctggtggacgccgccagcagcgcggacggcaccgca
cccgcgcagccgctggcggggccgcgccagccctacgtgcccaacttccgcatgccgcgc
cagtgccccatctgcggcagcgccgtggtgcgcgagccgggcgaggtcaaccaccgctgc
tccggcgggctgttctgccccgcgcagcgcaaacaggcggtgctgcacttcgcacagcgc
cgcgccatggacatcgagggcctgggcgagaagctggtggaccagctcgtcgaaggccac
gtgatccgcacgctgcccgacctgtaccggctcgggctgtccagccttgcgcagctcgac
cgcatggccgagaagtccgcgcagaacgtgctggatgcgctcgacaaatccaagcgcacc
acgctggcgcgctttctcttcggcctgggcatccgccatgtgggcgaggccacggccaag
gacctggcgcgccacttcggccggctcgacgccatcatggatgcgggcgtggagcagttg
ctgcaggtgaatgacgtggggcccgtggtggccgaggccatccacaccttcttcgcgcaa
ccccacaaccgcgaggtggtcgagcagctgcgggcctgcggcgtcacctgggacgagagc
gagcccgctgccgccgccacgctgcccctggcgggcatgaccgtggtgctgaccggcacg
ctgcccaccctgggccgcgacgcagccaaggacctgctggagtccgccggtgccaaggtg
gcaggttcggtcagcaagaagacgcactacgtggtggccggcgccgacgcgggcagcaag
ctcgccaaggcgcaggaactgggcatccccgtgctggacgaggatgggttgcatgcgttg
ctgcggggcacaacgcccaacgcaggtgggggctag
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