Desemzia incerta: QNK01_11500
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Entry
QNK01_11500 CDS
T09072
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dinc
Desemzia incerta
Pathway
dinc03030
DNA replication
dinc03410
Base excision repair
dinc03420
Nucleotide excision repair
dinc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dinc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QNK01_11500 (ligA)
03410 Base excision repair
QNK01_11500 (ligA)
03420 Nucleotide excision repair
QNK01_11500 (ligA)
03430 Mismatch repair
QNK01_11500 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dinc03032
]
QNK01_11500 (ligA)
03400 DNA repair and recombination proteins [BR:
dinc03400
]
QNK01_11500 (ligA)
Enzymes [BR:
dinc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QNK01_11500 (ligA)
DNA replication proteins [BR:
dinc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QNK01_11500 (ligA)
DNA repair and recombination proteins [BR:
dinc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QNK01_11500 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QNK01_11500 (ligA)
MMR (mismatch excision repair)
DNA ligase
QNK01_11500 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QNK01_11500 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
WHZ32054
LinkDB
All DBs
Position
complement(2366729..2368777)
Genome browser
AA seq
682 aa
AA seq
DB search
MTDKTGNYSPTSLSFEEATKRAEELRETLDRYSHQYYVLDKPTVTDAEYDSLYRELVSLE
TAYPELISGDSPTQRVGGTVLPGFEKVTHDIPMLSLGNAFGEQDLLDFDRRVRKLTDKIV
EYICELKIDGLALSLKYEEGKLVQAATRGDGVVGENVTQNVRTIKSVPLKLRKPYSIEVR
GECYMPKEAFVTLNMEREENGEDIFANPRNAAAGGLRNLNPKETAKRNLNTFMYTIADFG
ELDAVSQSDALDQLDTIGIRTNHERRVYETIEEVWAYVQEFQEHRSGLPYDIDGIVIKVN
DFEAQKDIGYTIKAPRWAIAYKFPAEEAHTVIRTIEWTVGRTGVVTPTAIMDPVQLAGTT
VQRASLHNVDLIKERDIRLFDTVVVHKAGDIIPEVTRVVEDLRPEDSVPYEFPTHCPACD
SELVHLDEEVALRCINPKCPAQIIEGLTHFVSRNAMNIDGLGNKVIIQMYEKELVKDVAD
LYSLTYDQLVTLDKIKDKSANNLLNAIDASRSNSLERLIFGLGIRNVGVNAAKLLAEEFE
TIEKLQQAKAEDITAIEGIGKIIAESVVAFFELPEVAELINELRAKDINLKYLGKKKEVA
EESDSYFNGKTIVLTGKLTHFTREEAKERIENLGGKVTGSVSKKTDFLVAGEDAGSKLTK
AQSLEIPVWNEDQLLETLEGEE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
gtgacggataaaacaggaaactattctccaacgagtttatcttttgaagaggctacaaag
agagcagaggaattaagagaaactttagatcgttacagtcatcaatattatgtattggat
aaacccacagtaacagatgcggaatatgacagtttatatagagaacttgtcagcttagaa
acagcttatcctgaattgatcagtggcgattctcctacgcaacgggttggcggaacagtt
cttcccggatttgaaaaagtgactcatgacattcctatgctgagtcttggtaatgcattt
ggagagcaggacttattagactttgaccgtcgagtacgaaaattgacggataaaatagtg
gagtatatttgtgagctgaaaatcgatggtctggccctttctttaaaatatgaagaagga
aaattggtacaagctgctactcgaggtgatggagtagtgggcgagaatgtgactcaaaat
gttcggactataaaatccgttccgttaaaactgagaaaaccttattcgattgaagtacgc
ggtgagtgttatatgccgaaagaagcttttgtaacattgaatatggaacgagaagagaat
ggggaagacatttttgccaatcctagaaacgcagcagctggaggattaagaaatttgaat
ccaaaagaaacagcgaagcgtaatttaaataccttcatgtatactattgctgattttgga
gaacttgatgcagtcagccagtctgatgcactggaccaattagatactattggcatccga
acaaatcacgagcgccgtgtttacgaaactattgaagaagtatgggcgtatgttcaagag
tttcaagagcaccgcagcggtctgccttatgatattgacggtatcgtcatcaaagtaaat
gattttgaagctcaaaaagatatcgggtatacgatcaaagctccacgttgggcgatagcg
tataagtttcctgctgaagaagcacatacagtcatccgaacaatcgaatggactgttgga
agaacaggagtagtcactcctactgctatcatggatcctgttcaattagccggaacgact
gtgcaaagagcgagtttacacaacgtagatttgatcaaagagcgagacattcgcttattt
gataccgtagtggtccataaagcgggagacatcatacctgaagtgacgcgagtggtagaa
gatttgcgtcctgaagacagcgttccatatgaatttccgacccattgtccggcctgcgac
agcgagttggtgcatttagatgaagaagtggcattgcgctgcatcaatccaaaatgtcct
gcacaaatcattgaagggttgactcattttgtatcccgtaatgccatgaacattgatgga
ttagggaataaagtcattattcaaatgtatgaaaaagaattggtaaaagatgtagcggat
ttgtacagtttaacgtatgatcaactagtcactttagataaaatcaaagacaagtctgca
aataatttgttgaatgctattgatgcaagccgcagtaattcattagaacggttgattttc
ggattgggtattcgcaatgtaggtgtaaatgcagcgaaattgctagcagaagaatttgaa
accatcgagaagctgcaacaagcaaaagctgaagatatcacagctattgaaggcattggt
aagatcattgctgagagtgtagtagcatttttcgagcttccggaagtggccgagttgatc
aatgagcttagagcaaaagacatcaacttgaagtatcttggaaagaaaaaagaagtggca
gaagaaagtgattcatatttcaatggaaaaacaattgtcttgaccggaaaattaactcac
tttacgcgtgaagaagctaaagaacgaattgagaatctgggcggaaaagtaactggaagt
gtgtctaaaaaaacggactttctagttgccggagaagatgcaggaagcaaattgacaaaa
gcgcaaagtttagagattcccgtttggaacgaggatcaattgttggaaacattagaagga
gaggaataa
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