Diaphorobacter sp. JS3051: I3K84_03505
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Entry
I3K84_03505 CDS
T11034
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dis Diaphorobacter sp. JS3051
Pathway
dis03030
DNA replication
dis03410
Base excision repair
dis03420
Nucleotide excision repair
dis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I3K84_03505 (ligA)
03410 Base excision repair
I3K84_03505 (ligA)
03420 Nucleotide excision repair
I3K84_03505 (ligA)
03430 Mismatch repair
I3K84_03505 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dis03032
]
I3K84_03505 (ligA)
03400 DNA repair and recombination proteins [BR:
dis03400
]
I3K84_03505 (ligA)
Enzymes [BR:
dis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I3K84_03505 (ligA)
DNA replication proteins [BR:
dis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I3K84_03505 (ligA)
DNA repair and recombination proteins [BR:
dis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I3K84_03505 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I3K84_03505 (ligA)
MMR (mismatch excision repair)
DNA ligase
I3K84_03505 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I3K84_03505 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
DUF4796_N
BRCT_2
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QPN31715
LinkDB
All DBs
Position
738111..740306
Genome browser
AA seq
731 aa
AA seq
DB search
MTEQSDLFPAPAPKGSALVATKIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQQLQAL
EGAYPDLVTPDSPTQRVLGAVLDGLTPVRHRVPMLSIRTETDTAASGAQAFDARVRRELK
LPPDAPPVEYVAEPKFDGLAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLP
AGVPPVLEVRGEVYMRRADFNALNERQREKGDKTFVNPRNAAAGAVRQLDSGITAQRPLS
FFAYGLGEVTPAAEGGPDFGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAER
DALPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKL
TPVARLAPVFVGGVTVTNATLHNLFELRRKKVRVGDQVIVRRAGDVIPEVVGVVPAGAGL
AVLAGSDALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVREPGEVNHRC
SGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVEGHVIRTLPDLYRLGLSSLAQLD
RMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHFGQLDAIMDAGVEQL
LQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWDESEPAAAATLPLAGMTVVLTGT
LPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAGSKLAKAQELGIPVLDEDGLHAL
LRGTPPNAGGA
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacaatccgacctttttccggctcccgcgcccaaggggtctgcgctggtagct
acaaaaatcaaagcgctgcgcgagcagctgaaccgctgggcgcacgagtactacgtccag
gacacgccgagcgtgcccgatgccgagtatgaccgcgcgttccagcagttgcaggcgctg
gagggcgcttaccccgacctggtgacgcccgactcgcccacgcagcgcgtgctgggcgcg
gtgctggacgggctgacaccggtgcgccaccgcgtgcccatgctcagcatccgtaccgaa
accgacaccgcggccagcggcgcccaagccttcgacgcgcgcgtgcgccgtgaactgaag
ctgccgcccgatgcgccgccggtggaatacgtggccgaacccaagttcgacggcctggcg
atgagcctgcgctacgagggcgggcgcctggtgcaggccgccacgcgcggtgacggcgag
gtgggcgaggatgtgacgcacaacgtgcgcaccatccgccagatccccctgagcctgccc
gccggcgtgccgccggtgctggaggtgcgcggggaggtctacatgcgccgcgcggacttc
aatgcactcaacgaacgccagcgcgagaagggcgacaagaccttcgtcaacccgcgcaac
gccgccgccggcgcggtgcgccagttggactcaggcatcacggcgcagcggccgctgtcg
ttcttcgcctacggcctgggcgaggtcacgcccgctgccgagggcgggcccgacttcggc
acgcacttcggcatgctgcagcagctcaaggaatggggctttccggtcgcagcccaggta
cagattgcgcaaggcgcttctgaactcatagcgttccatcagcgtgtgggggccgaacgg
gacgcgctgccctacgacatcgacggcgtggtctacaaggtcaacagcctggcactgcag
cgccagctgggctttgtgacgcgcgagccgcgctgggccgtggctcacaaatacccggcc
caggagatggtcacgcgcgtggaaggcatcgacgtgcaggtgggccgcacgggcaagctg
acgcccgtggcgcgactcgcgccggtgttcgtgggcggcgtcacggtgaccaatgccacg
ctgcacaacctgttcgagctgcgccgcaagaaagtgcgcgtgggcgaccaggtgatcgtg
cgccgcgcgggcgacgtgattcccgaggtggtgggcgtggtgccggcgggcgcaggcctg
gcagtgctggcgggctccgacgcgctggtggacgccgccagcagcgcggacggcaccgca
cccgcgcagccgctggcggggccgcgccagccctacgtgcccaacttccgcatgccgcgc
cagtgccccatctgcggcagcgccgtggtgcgcgagccgggcgaggtcaaccaccgctgc
tccggcgggctgttctgccccgcgcagcgcaaacaggcggtgctgcacttcgcccagcgc
cgcgccatggacatcgagggcctgggcgagaagctggtggaccagctcgtcgagggccac
gtgatccgcacgctgcccgacctgtaccggctcgggctgtccagccttgcgcagctcgac
cgcatggccgagaagtccgcgcagaacgtgctggatgcgctcgacaaatccaagcgcacc
acgctggcgcgctttctcttcggcctgggcatccgccatgtgggcgaggccacggccaag
gacctggcgcgccacttcggccagttggacgccatcatggatgcgggcgtggagcagttg
ctgcaggtgaacgacgtggggcccgtggtggccgaggccatccacaccttcttcgcgcaa
ccccacaaccgcgaggtggtcgagcaactgcgggcctgcggcgtcacctgggacgagagc
gagcccgctgccgccgccacgctgcccctggcgggcatgaccgtggtgctgaccggcacg
ctgcccaccctgggccgcgacgcggccaaggacctgctggagtccgccggtgccaaggtg
gcaggttcggtcagcaagaagacgcactacgtggtggccggcgccgacgcgggcagcaag
ctcgccaaggcgcaggagctgggcatccccgtgctggacgaggacgggttgcatgcgttg
ctgcggggcacaccgcccaacgcaggtggggcctag
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