Dellaglioa kimchii: ACE83Q_00680
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Entry
ACE83Q_00680 CDS
T11222
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dki Dellaglioa kimchii
Pathway
dki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACE83Q_00680 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dki03019
]
ACE83Q_00680 (rnr)
03016 Transfer RNA biogenesis [BR:
dki03016
]
ACE83Q_00680 (rnr)
Enzymes [BR:
dki01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACE83Q_00680 (rnr)
Messenger RNA biogenesis [BR:
dki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACE83Q_00680 (rnr)
Transfer RNA biogenesis [BR:
dki03016
]
Prokaryotic type
tRNA degradation factors
ACE83Q_00680 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
RNase_II_C_S1
CSD
Cas6b_C
Motif
Other DBs
NCBI-ProteinID:
XLP63632
LinkDB
All DBs
Position
144538..146889
Genome browser
AA seq
783 aa
AA seq
DB search
MDKKMQELILKELKIKENESFSVEELTAALKLEGQDAFKELVKTLAEMERKREVKITSEG
KFQIALQTPQLVGIFHANDRGFGFVTIDPEQPDVFVNPTQTMSALNGDSVEIEITSAAKP
GDDRGPEGKVNKIVEHNVTSIVGEFEVEPSDLENSGIIGHLVVKNKKLQRYNLLVTGVGL
HPVAGEVITADITAYPTSEKPLVIETLVKEVVGNKDDPGMDILQVVYQHDIPSEFPEDVM
AQAEATPEVVLPEEKIGRVDLTDQTLVTIDSIDSKDLDDAVTAWKLDNGNYHLGVHIADV
SHYVQPGTPLDREAYERGTSVYLTDRVIPMLPHKLSNGICSLNPKVERLAMSCEMEITPE
GYVVNHKIFQSVIKTTERMTYKAINKILESDDAKTKAKYEELVPMFETMGELHKILEKMR
KKRGAISFDDNESKIIVDEAGHPIDIQIRTRGTSERLVESFMLAANETVAAHYDKLKVPF
VYRVHETPKNEKVMRFFETLTSFGIVVKGDSKNVTPKMLQGVLKEVAGKPEESMVSVMLL
RSMQQAKYTDESLGHFGLAATDYTHFTSPIRRYPDLMVHRLIRFYEENGIGDAQKEKYAE
QLPELTTHTSQMERRAIDAERDTDAMKKAEYMADHVGETFEGVVSSVMKFGVFVSLPNTV
EGLVHISNMKDDYYEYLDMHMALVGKRTKRTFRIGQPIEVKVAKVDIEQSAIDFEIVNPQ
NTPTSDLRGKGGNFKRPGNGRPGDKKPYNRNGKPAAGNSNGKKPFYKSANKNTAPRKNNT
RQK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaagatgcaagaacttatattaaaagaactaaaaattaaagaaaatgaatca
ttcagtgttgaagaattaacagctgcccttaaattagaaggccaggatgcgttcaaagaa
cttgttaaaacacttgctgaaatggaacgtaaacgtgaagtgaaaattacatcagaaggc
aaatttcaaattgcacttcaaacaccacaattagtgggtatttttcatgcaaatgatcgt
ggatttggattcgttacgattgatccagagcaacctgatgttttcgttaatccaacacaa
acaatgtctgccttaaatggtgatagtgttgagattgagattacaagtgctgctaaacct
ggggatgaccgtggtcctgaaggtaaagttaataaaattgttgaacataatgtaacgtca
attgttggagaatttgaagttgaaccatctgaccttgaaaattcaggaataattggccat
ttagttgttaaaaacaagaaattacaacgttataacttattggtaacaggggttggttta
catccagttgctggagaagttattacagctgatattactgcttacccaacaagtgaaaaa
ccattagttattgaaacattggttaaagaagttgtgggtaacaaagacgatccaggtatg
gatattttacaagtcgtttatcaacatgatattcctagtgaatttcctgaagatgttatg
gctcaagctgaagcaactccagaagttgtactaccagaagaaaaaattggtcgcgttgat
ttaacggatcaaacgttagtaacaattgatagtattgattctaaggatttagatgatgct
gttactgcctggaaacttgataacgggaactaccatttaggtgtgcatattgctgatgtt
tcgcattatgtccaaccaggtacaccacttgatcgtgaagcatacgaacgtggaacgagt
gtttatttaactgaccgtgttattccaatgttgcctcataaattatcaaatggtatttgt
tcattaaatccaaaagttgaacgccttgctatgagttgtgaaatggaaattacaccagaa
ggttatgttgttaatcacaaaatcttccaaagtgtgattaaaacgacagaacgtatgact
tataaagccattaacaagattcttgaatcagatgatgcaaaaacgaaagctaaatatgaa
gaattggtcccaatgtttgaaacaatgggcgaattacacaaaattcttgaaaaaatgcgt
aaaaaacgtggtgcaattagttttgatgataatgaatctaagattattgttgatgaagcg
ggtcacccaattgatattcaaattagaactcgtggaacaagtgaacgtttagttgaatca
tttatgttagctgcaaatgaaactgttgcagctcattacgataaattaaaagtacctttt
gtttaccgtgtgcatgaaacacctaagaatgaaaaagtaatgcgtttcttcgaaacttta
acaagttttggtatcgttgttaaaggtgatagtaagaatgtaacacctaaaatgttacaa
ggtgttttaaaagaagtagctggtaaacctgaagaatcaatggtttctgttatgttactt
agaagtatgcaacaagctaaatatactgatgaatcattaggtcactttggtttagctgct
actgattatacgcattttacgtcaccaattagacgttaccctgatttgatggttcatcgt
ttaattcgtttctacgaagaaaatggtattggggacgctcaaaaagaaaaatatgctgaa
caattacctgaacttacaacacacacatcacaaatggaacgtcgcgcaattgatgctgaa
cgtgatactgacgcaatgaaaaaagctgaatacatggctgatcatgttggtgaaaccttt
gaaggtgttgttagctcagttatgaagtttggtgtcttcgtttcattaccaaatactgtt
gaaggtcttgttcatattagtaatatgaaggatgactattatgaatatttagatatgcat
atggcattagtaggtaagagaactaagagaaccttcagaattggtcaaccaatcgaagta
aaagttgctaaagttgatattgagcaaagtgcgattgattttgaaattgttaatccacaa
aatacaccaacttctgatttacgaggtaaaggtggaaacttcaaacgtccaggtaatggt
cgtccaggagacaagaaaccttataaccgtaatggtaaaccagctgctggaaatagtaat
ggaaagaaaccgttctacaaatcagctaacaaaaacacagcaccaagaaaaaataataca
cgtcaaaaataa
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