Dietzia kunjamensis: NHB83_09085
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Entry
NHB83_09085 CDS
T08346
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dkn
Dietzia kunjamensis
Pathway
dkn03030
DNA replication
dkn03410
Base excision repair
dkn03420
Nucleotide excision repair
dkn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dkn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NHB83_09085 (ligA)
03410 Base excision repair
NHB83_09085 (ligA)
03420 Nucleotide excision repair
NHB83_09085 (ligA)
03430 Mismatch repair
NHB83_09085 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dkn03032
]
NHB83_09085 (ligA)
03400 DNA repair and recombination proteins [BR:
dkn03400
]
NHB83_09085 (ligA)
Enzymes [BR:
dkn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NHB83_09085 (ligA)
DNA replication proteins [BR:
dkn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NHB83_09085 (ligA)
DNA repair and recombination proteins [BR:
dkn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NHB83_09085 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NHB83_09085 (ligA)
MMR (mismatch excision repair)
DNA ligase
NHB83_09085 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NHB83_09085 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
USX44466
LinkDB
All DBs
Position
complement(1948265..1950463)
Genome browser
AA seq
732 aa
AA seq
DB search
MSLPDDNSQPVGTGDIPPEVRQEWTELAETVRDHQFRYYVKDAPIVSDAEFDRLFGELQA
LEETHPGLRSADSPTQLVGGGFSTDFAPVEHLERMTSLDNVFSEEELRDWVASAVEQAGV
PEDSLPFLCEVKIDGVALDLVYRAGKLVSAATRGDGRTGEDVTLNARTIDDIPVTLTPSD
DRPVPSLIEVRGEVFFRLEDFAELNARLVAEGKAPFANPRNSAAGSLRQKNPAITAQRRL
GMYCHGLGAVEGATFESLHDVYLALADWGLPVSPHTAPATGVEEVVERMRFWGEHRSDPE
HEIDGLVVKIDDRAVQRRLGQTSRAPRWAIAYKYPPEEVMTTLLDIRVSVGRTGRVTPFA
HMEPVTVAGSTVSLATLHNQTEVIRKGVLIGDTVVIRKAGDVIPEVLGPVVERRDGTERE
FVFPERCPECDTVLAPAKEGDADWRCPNQRSCPAQLRERLFHLASRNALDIEALGYEGAS
DLLTSGVLVNEAGLFDLTEPDLLRTDLYTRVDKATRKQIEAGAEPERTVLTENGRKLLAN
LATARDRPLWRVLVALSIRHVGPTAARALATRFGTMEAIRAASEEELAETDGVGSTIAAS
VVEWFDVDWHREIVDRWTAAGVSMADERDESIPRTLEGLTIVATGSLEGFTRDGIKEAII
ARGGKASGSVSKKTDYVVVGDNPGSKAAKAEELGLTILDEAGFVDLMDNGPAGAGQGDVD
PEVDAEPEQTDP
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gtgagccttcccgatgacaacagtcagcccgtcggcacgggggacatcccgcccgaggtg
cggcaggagtggaccgagctcgcagagacggtccgcgatcaccagttccgctactacgtc
aaggacgcgcccatcgtctccgacgccgagttcgaccggctcttcggcgagttgcaggcg
ctcgaggagacgcacccggggctgcggagcgccgactcacccacccaattggtcggcggc
ggcttctcgacggatttcgctccggtcgagcacctcgagcggatgaccagcctggacaac
gtgttctccgaggaggagttgcgcgactgggtcgcctccgccgtcgagcaggcgggcgtc
ccggaggacagcctgccgttcctgtgcgaggtcaagatcgacggcgtggcattggacctc
gtctaccgtgccgggaagttggtcagcgccgccacgcgcggtgacggccgtacgggagag
gacgtgaccctcaacgcgcggaccatcgacgacatcccggtgacgctcaccccgtcggac
gaccgcccggtgccctcgctcatcgaggtgcggggcgaggtcttcttccggctcgaggac
ttcgccgagctcaacgcccgtctggtggcggagggcaaggcgccgttcgccaacccgcgc
aacagtgcggccgggtcgctgcgccagaagaaccccgccatcaccgcccagcgccggctc
ggcatgtactgccacggtctcggtgcggtcgagggcgcgaccttcgagagcctccacgac
gtctacctcgccctcgccgactggggcctgcccgtctcaccgcacaccgcgcccgccacg
ggggtggaggaggtggtcgagcggatgaggttctggggtgagcaccgcagcgaccccgaa
cacgagatcgacggtctcgtcgtgaagatcgacgaccgcgcggtccaacgccgactcggc
cagacgtcccgcgcgccgcggtgggccatcgcctacaagtacccgcccgaggaggtcatg
acgacactcctggacatccgggtctccgtcgggcgcaccgggcgggtcacccccttcgct
cacatggagccggtcacggtcgccggatcgacggtctcgttggccaccctccacaaccag
accgaggtgatccgcaagggcgtgctgatcggcgacacggtggtcatccggaaggccggt
gacgtgatccccgaggtcctcggcccggtggtcgagcggcgcgacggcaccgagcgcgag
ttcgtcttccccgaacgttgtccggagtgcgatacggtcctggccccggcgaaggagggc
gacgccgactggcgctgccccaaccagcgttcctgtcccgcccagctgcgggagcggctg
ttccatctcgcctcgcgcaacgccctcgacatcgaggcgctcgggtacgagggcgcctcg
gacctgctgaccagcggggtgctggtcaacgaggccggactgttcgacctcaccgagccc
gacctgctcaggacagacctctacacccgcgtcgacaaggccacccgcaagcagatcgag
gcgggggccgaacccgaacgcacggtgctcaccgagaacggtcgcaagctgctggccaac
ctcgccaccgcccgggaccgaccgctctggcgggtactggtcgcgctgtcgatccgacac
gtgggccccacggccgcgcgcgccctggcgacccggttcgggaccatggaggccatccgc
gccgcgtccgaggaggaactggcggagacggacggggtcgggtcgaccatcgcggcctcg
gtggtcgagtggttcgacgtcgactggcaccgcgagatcgtcgaccggtggaccgccgcc
ggcgtctcgatggccgacgagcgtgacgaatcgatcccgcggacgctcgagggcctgacg
atcgtggcgaccggctcactcgagggcttcacgcgcgacggcatcaaggaggcgatcatc
gctcgcggcggcaaggcctccgggtcggtctccaaaaaaaccgactacgtcgtggtgggc
gacaacccggggtccaaagcggccaaggccgaggagttgggcctgacgatcctggacgag
gccggcttcgtcgacctgatggacaacggtccggccggggcggggcaaggggacgtggat
ccggaggtggacgcggaaccggagcagaccgacccgtga
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