Delftia lacustris: I6G47_06120
Help
Entry
I6G47_06120 CDS
T06974
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dla
Delftia lacustris
Pathway
dla03030
DNA replication
dla03410
Base excision repair
dla03420
Nucleotide excision repair
dla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6G47_06120 (ligA)
03410 Base excision repair
I6G47_06120 (ligA)
03420 Nucleotide excision repair
I6G47_06120 (ligA)
03430 Mismatch repair
I6G47_06120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dla03032
]
I6G47_06120 (ligA)
03400 DNA repair and recombination proteins [BR:
dla03400
]
I6G47_06120 (ligA)
Enzymes [BR:
dla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6G47_06120 (ligA)
DNA replication proteins [BR:
dla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6G47_06120 (ligA)
DNA repair and recombination proteins [BR:
dla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6G47_06120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6G47_06120 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6G47_06120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6G47_06120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QPS82653
UniProt:
A0A7T2YX81
LinkDB
All DBs
Position
complement(1330697..1332832)
Genome browser
AA seq
711 aa
AA seq
DB search
MNDNLDLFSGAAPAAPESGAAPDKVLAKVQALRAQLNQWAHEYYVLDTPTVPDGEYDRVF
QQLQALEGAYPELVTPDSPTQRVIGAVLDGLMPVRHAVPMLSIRTETDNEATGAEAFDAR
IRKELELAEGAPPVEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRK
IPLSLPEGKGVPPVVEVRGEVYMGRADFVRLNERQQAAGGKSFANPRNAAAGSVRQLDSG
IAAQRPLSFFAYGLGEITPAAQGGPDFGTHYAMLQTLRDWGFPVAPQVCIAKGAAELVAF
HQRMGAERATLPYEIDGVVYKVNSLAQQRQLGFVSREPRWAVAHKYPAEEMPTRMEGIDI
QVGRTGKLTPVARLAPVAVGGVIVTNATLHNLFEIRKKRVRTGDTVVVRRAGDVIPEVVG
RVPGDRPAYVPNFRMPAACPICGSAVSRPKGEANHRCTGGLFCPAQRKEAILHFAARRAM
DIEGLGDKLVDQLVDGHVVRTLPDLYRLGLVALASLDRMAEKSAQNVLDALEKSKKTTLA
RFLFGLGIRQVGESTAKDLARHFGQLDAIMDASVEQLLQVRDVGPIVAESIHTFFAQPHN
REVVEQLRACGVHWEEGAAREQTAQPLAGMTVVLTGTLPTLGRDQAKEMLEAAGAKVSGS
VSKKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALLAGDPPAAAAAEQG
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacaatctggatctcttctccggcgcagcccccgcggcgccggagtccggggcc
gcccccgacaaggtgctggccaaggtgcaggcgctgcgcgcccagctcaaccaatgggca
catgagtactacgtgctggacacgcccaccgtgcccgacggcgagtacgaccgcgtcttc
cagcaattgcaggccttggaaggtgcctaccccgaactggtcaccccggactcgcccacg
cagcgcgtgatcggcgccgtgctagacggcctgatgcctgtgcgccatgccgtgcccatg
ctcagcatccgcaccgagaccgacaacgaggccacgggtgccgaggccttcgacgcacgc
atccgcaaggagctggaactggccgaaggcgcaccgcccgtggaatacgtggccgagccc
aagttcgatggcctggccatgaacctgcgctacgagaacggccgcctggtgcaggccacc
acgcgcggcgacggcgaggtgggcgaggacgtcacacacaacatccgcaccatccgcaag
attccgctgtcccttcccgaaggcaagggcgtgccgcccgtggtcgaggtgcgcggcgag
gtctacatgggccgcgccgacttcgtccggctcaacgaacgccagcaggccgccggcggc
aagagctttgccaatccgcgcaatgcggcggcgggctcggtgcgccagctggactcgggc
attgctgcgcagcgaccgctgtccttcttcgcctatggcctgggagagatcacgccggcc
gcgcagggcggccccgacttcggcacccactacgccatgctgcagacgctgcgcgactgg
ggcttcccggtggcgccccaggtctgcattgccaagggtgcggccgagctggtggccttc
caccagcgcatgggcgccgagcgcgccacgctgccctacgagatcgacggcgtggtctac
aaggtcaacagcctggcccagcagcgccagctgggctttgtctcgcgcgagccgcgctgg
gccgtggcccacaagtacccggccgaggaaatgcccacgcgcatggaaggcatcgacata
caggtcggccgcacgggcaagctcacccccgtggcgcgcctggcgcccgtggccgtgggc
ggcgtcatcgtcaccaatgccacgctgcacaacctgttcgagatccgcaagaagcgcgtg
cgcaccggcgacaccgtggtcgtgcgccgcgccggcgatgtgattcccgaagtcgtgggc
cgcgtgcccggcgaccggccggcctatgtgcccaacttccgcatgcccgctgcatgcccc
atctgcggcagcgcggtgtcgcgccccaagggcgaggccaaccaccgctgcacgggcggc
ctgttctgcccggcgcagcgcaaggaggccatcctgcacttcgccgcgcggcgcgccatg
gacatcgagggcctgggcgacaagctggtggaccagttggtggacggccatgtggtgcgc
acgctgcccgacctctaccgcctgggcctggtggccctggcatcgctggaccgcatggcc
gagaagtcggcccagaacgtgctggatgcgctggagaaatccaagaagaccacgctggcg
cgattcctcttcggcctgggcatccgccaggtcggcgagtccacggccaaggacctggcc
cgccatttcggccagctggacgccatcatggacgccagcgtcgagcaactgctgcaggtg
cgcgacgtcgggcccatcgtggccgagagcatccacaccttcttcgcccagccccacaac
cgcgaggtggtcgagcagttgcgtgcctgcggcgtgcactgggaagagggcgcggcgcgc
gagcagaccgcccagcccctggccggcatgaccgtggtgctcaccggcacgctgcccacg
ctgggccgcgaccaggccaaggagatgctggaggccgctggcgccaaggtctccggatcg
gtcagcaaaaagaccagctacgtggtggcgggcgccgaggccggcagcaagctggccaag
gccgaggaactgggtgtgcccgtgctggacgaggccggcatgctggccctgctggcgggt
gacccccctgctgcagccgcagcggagcagggctga
DBGET
integrated database retrieval system
