KEGG   PATHWAY: dle03060
Entry
dle03060                    Pathway                                
Name
Protein export - Delphinapterus leucas (beluga whale)
Description
The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
dle03060  Protein export
dle03060

Other DBs
GO: 0043952 0043953
Organism
Delphinapterus leucas (beluga whale) [GN:dle]
Gene
111163801  GET1; tail-anchored protein insertion receptor WRB isoform X1 [KO:K22384]
111164192  OXA1L; mitochondrial inner membrane protein OXA1L [KO:K03217]
111164296  SEC63; translocation protein SEC63 homolog [KO:K09540]
111165470  SRPRA; signal recognition particle receptor subunit alpha [KO:K13431]
111166527  GET3; ATPase ASNA1 [KO:K01551] [EC:7.3.2.7 7.3.-.-]
111168794  SEC61A1; protein transport protein Sec61 subunit alpha isoform X1 [KO:K10956]
111169346  [KO:K23387]
111169348  [KO:K23387]
111169411  SRP72; signal recognition particle subunit SRP72 [KO:K03108]
111169653  SEC11A; signal peptidase complex catalytic subunit SEC11A isoform X1 [KO:K13280] [EC:3.4.21.89]
111170491  SGTA; small glutamine-rich tetratricopeptide repeat-containing protein alpha [KO:K16365]
111170728  BAG6; large proline-rich protein BAG6 isoform X1 [KO:K23390]
111170971  UBL4A; ubiquitin-like protein 4A isoform X1 [KO:K23388]
111172756  [KO:K03104]
111173230  SRP54; signal recognition particle 54 kDa protein [KO:K03106] [EC:3.6.5.4]
111173343  SPCS3; signal peptidase complex subunit 3 [KO:K12948] [EC:3.4.-.-]
111174229  SEC62; translocation protein SEC62 isoform X1 [KO:K12275]
111174302  SPCS1; signal peptidase complex subunit 1 [KO:K12946] [EC:3.4.-.-]
111176931  [KO:K13280] [EC:3.4.21.89]
111177217  HSPA5; endoplasmic reticulum chaperone BiP [KO:K09490] [EC:3.6.4.10]
111177425  [KO:K03104]
111177517  SRP9; signal recognition particle 9 kDa protein [KO:K03109]
111178002  SEC61A2; protein transport protein Sec61 subunit alpha isoform X1 [KO:K10956]
111178768  [KO:K03104]
111178769  [KO:K03104]
111179200  SRPRB; signal recognition particle receptor subunit beta isoform X1 [KO:K12272]
111179442  IMMP2L; mitochondrial inner membrane protease subunit 2 isoform X1 [KO:K09648] [EC:3.4.21.-]
111179647  TMEM208; transmembrane protein 208 isoform X1 [KO:K27164]
111179810  IMMP1L; mitochondrial inner membrane protease subunit 1 isoform X1 [KO:K09647] [EC:3.4.21.-]
111179890  UBL4B; LOW QUALITY PROTEIN: ubiquitin-like protein 4B [KO:K23388]
111180222  SEC11C; signal peptidase complex catalytic subunit SEC11C [KO:K13280] [EC:3.4.21.89]
111181759  SRP14; signal recognition particle 14 kDa protein isoform X1 [KO:K03104]
111182802  SRP68; signal recognition particle subunit SRP68 [KO:K03107]
111183671  SRP19; signal recognition particle 19 kDa protein isoform X1 [KO:K03105]
111184549  SEC61G; protein transport protein Sec61 subunit gamma [KO:K07342]
111184864  SPCS2; signal peptidase complex subunit 2 [KO:K12947] [EC:3.4.-.-]
111188085  SEC61B; protein transport protein Sec61 subunit beta [KO:K09481]
Reference
  Authors
Dalbey RE, Robinson C.
  Title
Protein translocation into and across the bacterial plasma membrane and the plant thylakoid membrane.
  Journal
Trends Biochem Sci 24:17-22 (1999)
DOI:10.1016/S0968-0004(98)01333-4
Reference
  Authors
Berks BC, Sargent F, Palmer T.
  Title
The Tat protein export pathway.
  Journal
Mol Microbiol 35:260-74 (2000)
DOI:10.1046/j.1365-2958.2000.01719.x
Reference
  Authors
Wexler M, Sargent F, Jack RL, Stanley NR, Bogsch EG, Robinson C, Berks BC, Palmer T.
  Title
TatD is a cytoplasmic protein with DNase activity. No requirement for TatD family proteins in sec-independent protein export.
  Journal
J Biol Chem 275:16717-22 (2000)
DOI:10.1074/jbc.M000800200
Reference
  Authors
Jongbloed JD, Martin U, Antelmann H, Hecker M, Tjalsma H, Venema G, Bron S, van Dijl JM, Muller J.
  Title
TatC is a specificity determinant for protein secretion via the twin-arginine translocation pathway.
  Journal
J Biol Chem 275:41350-7 (2000)
DOI:10.1074/jbc.M004887200
Reference
  Authors
Rapoport TA
  Title
Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes.
  Journal
Nature 450:663-9 (2007)
DOI:10.1038/nature06384
Reference
  Authors
Flower AM
  Title
The SecY translocation complex: convergence of genetics and structure.
  Journal
Trends Microbiol 15:203-10 (2007)
DOI:10.1016/j.tim.2007.03.001
Reference
  Authors
Osborne AR, Rapoport TA, van den Berg B
  Title
Protein translocation by the Sec61/SecY channel.
  Journal
Annu Rev Cell Dev Biol 21:529-50 (2005)
DOI:10.1146/annurev.cellbio.21.012704.133214
Reference
  Authors
Paetzel M, Karla A, Strynadka NC, Dalbey RE
  Title
Signal peptidases.
  Journal
Chem Rev 102:4549-80 (2002)
DOI:10.1021/cr010166y
Reference
  Authors
Paetzel M, Dalbey RE, Strynadka NC
  Title
The structure and mechanism of bacterial type I signal peptidases. A novel antibiotic target.
  Journal
Pharmacol Ther 87:27-49 (2000)
DOI:10.1016/S0163-7258(00)00064-4
Reference
  Authors
Ng SY, Chaban B, VanDyke DJ, Jarrell KF
  Title
Archaeal signal peptidases.
  Journal
Microbiology 153:305-14 (2007)
DOI:10.1099/mic.0.2006/003087-0
Reference
  Authors
Desvaux M, Hebraud M, Talon R, Henderson IR
  Title
Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue.
  Journal
Trends Microbiol 17:139-45 (2009)
DOI:10.1016/j.tim.2009.01.004
Reference
  Authors
Nakatogawa H, Murakami A, Ito K
  Title
Control of SecA and SecM translation by protein secretion.
  Journal
Curr Opin Microbiol 7:145-50 (2004)
DOI:10.1016/j.mib.2004.01.001
KO pathway
ko03060   

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