Candidatus Dehalogenimonas loeffleri: V8247_08515
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Entry
V8247_08515 CDS
T10610
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dlf Candidatus Dehalogenimonas loeffleri
Pathway
dlf03030
DNA replication
dlf03410
Base excision repair
dlf03420
Nucleotide excision repair
dlf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dlf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V8247_08515 (ligA)
03410 Base excision repair
V8247_08515 (ligA)
03420 Nucleotide excision repair
V8247_08515 (ligA)
03430 Mismatch repair
V8247_08515 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dlf03032
]
V8247_08515 (ligA)
03400 DNA repair and recombination proteins [BR:
dlf03400
]
V8247_08515 (ligA)
Enzymes [BR:
dlf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V8247_08515 (ligA)
DNA replication proteins [BR:
dlf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V8247_08515 (ligA)
DNA repair and recombination proteins [BR:
dlf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V8247_08515 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V8247_08515 (ligA)
MMR (mismatch excision repair)
DNA ligase
V8247_08515 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V8247_08515 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
HHH_3
RNA_ligase
HHH_8
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WWX25285
UniProt:
A0ABZ2J2Z0
LinkDB
All DBs
Position
1651839..1653905
Genome browser
AA seq
688 aa
AA seq
DB search
MIQILQAQERVLELRRLLNHHNYLYYVKDTPEISDESYDALLRELRQLEQEYPSLVIPDS
PTMRVGAEPLKAFGVITHRKPLLSLANAFSKAELQAWVKRIEKLLPGEEFTFVCEHKMDG
LAVAVTYEDGQLSTGATRGDGVEGENITANLRTIRSLPLSVANQSPEHFEVRGEVFLPKA
NFEQLNLKRDKAGLPLFANPRNAAAGSLRQLDPRVTAQRPLDIYVYALGWADGSQLPASH
WDTMERIKSWGFKLNPYNRHCRSLQEVEQYYDEWLEKRHTLPYEADGVVIKINDLAQQER
LGSAAREPRWAIAFKFPAHQATTILKDIGISVGRTGTLNPYAILEPVFVGGVIIRQASLH
NEEDIQRKDIRIGDTVVIQRAGDVIPQVVGPVLEKRPHNASVFSIETKLKGADGLSHCPV
CNSLIRKSPGEVMYYCPNATCPAQLAEKLEHFVSKSGMDIKGMGEQLAVAFLAEGLVKNV
ADIYSLEVSQLAARDRMKNKSAVNLIDAINKSRKRPLTNVIFALGIRHVGLESATVLAQN
FGTLKALFEADQAQLKIIPGIGDKIAESIITYFTEPQNRETVNRLIQVLETPPVTPDNST
GTDPLAGTEFVITGTLAGMTRQQAWDRITAAGGTYKTDLTKKTRFLVAGQEAGSKLTKAR
EMGIEILTEDQFIILIEKPVTEPQPRLF
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgattcaaatattacaggctcaagaacgtgttctggaactccggcgattgcttaatcac
cacaattatttgtattatgtcaaggacacgccagaaatatctgatgagtcatatgatgcc
ctgttaagagaactgcgacaactggaacaagaatatccttcactggtaatccctgactcc
ccgaccatgcgggtaggtgccgaaccgctgaaagcctttggcgttattacccaccgtaaa
cctcttttgtcattggctaatgcttttagcaaagcagaactgcaggcctgggtaaaaagg
atagaaaaattgttgccgggggaagagttcacctttgtatgcgaacacaaaatggacgga
ctggctgttgccgtaacctatgaagatggacagctttctaccggcgccacccgtggcgac
ggggtagaaggtgagaatatcaccgctaatttgcgcacaatcaggagtctgccgctctcc
gtggcaaatcagtcacccgaacattttgaagtccgcggtgaggtgtttttgcccaaagcc
aattttgaacagcttaatctgaaacgggataaagccggcttaccgctttttgccaatccc
cgaaacgcggctgccgggtcgctgaggcagttggatcccagggtcacggctcaaagaccg
ctggatatctatgtttatgccttaggctgggctgatggctcacaattaccggcgagccat
tgggacaccatggaacggattaagagttggggtttcaagctaaatccttacaaccgccat
tgccgttcgcttcaggaagttgaacagtattatgacgaatggctggaaaagcgccacacg
ctgccctatgaagccgacggtgtggtcattaaaataaacgatctggcacaacaggagcgc
ctgggttcggcggccagggaaccgcgctgggcaatagcctttaaatttccggcgcaccag
gcaaccaccattttgaaagatatcggcatcagtgtcggccggacaggcactttgaatcct
tatgctattctggaaccggtattcgtcggcggcgtgattatcagacaagcatcactgcac
aatgaagaagacatccagcgtaaggatatccgcatcggcgacactgtggtcattcaaagg
gcgggggacgttattccccaggttgtcgggccggtgttggaaaagcgaccccataatgcc
agtgtgttcagtattgaaactaaactaaaaggcgctgacgggttaagccattgtccggtc
tgtaattcgcttatcagaaaatcacccggcgaggtgatgtattattgcccgaatgccacc
tgcccggctcaattggccgagaaattggagcatttcgtctccaaatcaggcatggatatc
aagggcatgggagagcaattggccgttgcttttttggccgaaggcctagttaaaaacgtt
gccgatatttacagtcttgaggtttcccaactggctgcccgcgaccggatgaaaaacaaa
agcgcggttaatctcattgatgccattaacaaatcgcgcaagcgacccctgaccaatgtc
atctttgcgctgggtattcgtcacgtcggattggagagcgcgacggttctggcccaaaat
tttggcacgcttaaagctctgtttgaagccgaccaggcccaattaaaaattatccctggt
atcggcgacaagatcgccgaaagcataattacctacttcaccgaacctcaaaaccgggaa
actgttaaccggttaatccaggtgctggagactcccccggttacccctgacaattcaacc
ggaactgaccctttagccggaactgaatttgtaattaccggcacgctggcaggtatgacc
cggcagcaggcctgggatagaatcaccgccgccggaggcacatacaaaaccgatctaacc
aaaaagacgcgatttctggtagcgggccaggaggccggatccaaactgaccaaagccagg
gagatgggtattgagattttgactgaggaccagtttataatactgattgaaaaacctgtc
actgaaccacaaccgaggctgttttaa
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