Diaphorobacter limosus: P4826_04255
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Entry
P4826_04255 CDS
T10112
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dls Diaphorobacter limosus
Pathway
dls03030
DNA replication
dls03410
Base excision repair
dls03420
Nucleotide excision repair
dls03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P4826_04255 (ligA)
03410 Base excision repair
P4826_04255 (ligA)
03420 Nucleotide excision repair
P4826_04255 (ligA)
03430 Mismatch repair
P4826_04255 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dls03032
]
P4826_04255 (ligA)
03400 DNA repair and recombination proteins [BR:
dls03400
]
P4826_04255 (ligA)
Enzymes [BR:
dls01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P4826_04255 (ligA)
DNA replication proteins [BR:
dls03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P4826_04255 (ligA)
DNA repair and recombination proteins [BR:
dls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P4826_04255 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P4826_04255 (ligA)
MMR (mismatch excision repair)
DNA ligase
P4826_04255 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P4826_04255 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DUF4796_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WOO33306
LinkDB
All DBs
Position
complement(868692..870776)
Genome browser
AA seq
694 aa
AA seq
DB search
MTESLDLFSAPAPAASALVATKIENLRAQLNRWAHEYYVQDAPSVPDAEYDRVFQQLQAL
EGAYPGLVTPDSPTQRVIGAVMDGLASVRHSVPMLSIQTETDTEASGAEAFDARVRRELG
LDASAPPVEYVAEPKFDGLAMSLRYEHGRLTQAATRGDGEVGEDVTHNIRTIRQIPLTLP
ADVPPVLEVRGEVYMRRADFGALNERQRERGEKTFVNPRNAAAGAVRQLDSGITAKRPLS
FFAYGLGEITPAEQGGPDFGTHYALLQQLKTWGFPVAPQVQIALGASELIAFHRRLGAER
DALPYDIDGVVYKVNSLALQRQMGFKTREPRWAVAHKYPAQEMLTRCEGIDVQVGRTGKL
TPVARLAPVFVGGVTVTNATLHNLFEIRKKGVRVGDQVIVRRAGDVIPEVVGVVAGQRPA
YVPNFRMPRQCPVCGSAVVREAGEMNHRCSGGLFCPAQRKQALLHYAQRRALDIEGLGEK
LVDQLVDGELVRSLADLYRLDLPTLAPLERMAEKSAQNLLDALQKSKRTTLPRFLFGLGV
RHVGEATAKDLARHFGSLDAIMDAGAEQLLQVNDVGPVVADSIHTFFAQPHNREVVAALR
AHGVTWEEGAPAEHTALPLAGKTVVLTGTLPTLSRDAAKDLLEAAGAKVAGSVSKKTHYV
VAGAEAGSKLARAEELGIPVLDEDGLRALLRGAL
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagagtttggatcttttttcggctccagcgcccgctgcgtcagcgttggtagct
acaaaaattgagaatctgcgggcgcagctcaaccgctgggcgcacgagtactacgtgcag
gacgcacccagcgtgcccgacgccgagtacgaccgcgtgttccagcagctgcaggcgctg
gagggcgcctacccaggcctggtgacgcccgactcgcccacgcagcgcgtgataggcgcg
gtgatggatgggctggcgagcgtgcgccacagcgtgcccatgctcagcatccagaccgag
acggataccgaggccagcggcgccgaggccttcgacgcccgcgtacgccgcgagctgggc
ctcgatgcatcagccccgcccgtggaatacgtggccgagcccaagttcgacggcctggcc
atgagcctgcgctacgagcacggccgcctcacgcaggccgccacgcgcggcgacggcgag
gtgggcgaggacgtgacgcacaacatccgcaccatccggcagatcccgctgacgcttccg
gccgacgtgccgccggtgctggaggtgcgcggcgaggtctatatgcgccgcgccgacttc
ggcgcgttgaacgaacgccagcgcgagcggggcgagaagaccttcgtcaacccgcgcaac
gccgccgccggcgcggtgcgccagctcgactcagggataaccgccaagcgcccgctgtcc
ttctttgcctatggcctgggcgagatcacgccggcggagcagggcgggcccgactttggc
acgcattacgcgctgctgcagcaactcaaaacctgggggtttccggttgcaccccaggtt
cagattgcgctaggcgcttctgaactaatagcattccaccgccgcctgggcgccgagcgc
gatgcgctcccctacgacatcgacggcgtggtctacaaggtcaacagcctggcgctgcag
cgccagatgggcttcaagacgcgcgagccgcgctgggccgtggcgcacaagtacccggcg
caggagatgctgacgcgctgcgaaggcatagacgtgcaggtcggccgcaccggcaagctg
acacccgtggcgcggctggcgccggtgttcgtgggcggcgtcacggtgacgaatgccacg
ctgcacaacctgttcgagatccgcaagaagggcgtgcgtgtgggcgaccaggtcatcgtg
cgccgcgcgggcgacgtgattccagaggtggtgggcgtggtcgccggccagcgcccggcc
tacgtgcccaacttccgcatgccgcgccaatgcccggtgtgcggcagtgccgtggtgcgc
gaggccggcgagatgaaccaccgctgctcgggcgggctgttttgcccggcccagcgcaag
caggcgctgctgcactacgcgcagcgccgcgccctggacatcgaggggctgggcgaaaag
ctggtcgatcagctggtcgatggtgagctggtgcgcagcctggcagacctgtaccgcctg
gatctgcccacgctggcgcccctggagcgcatggccgagaagtcggcgcagaacctgctg
gatgcgctgcaaaaatcaaagcgcaccacgctaccgcggtttctgttcggcctgggggtg
cgccatgtgggcgaggccacggccaaggatctggcacggcatttcggcagcctcgacgcc
atcatggacgcgggagcggagcagctcttgcaggtgaacgacgtggggcccgtggtggcc
gattccatccataccttcttcgcccagccgcacaaccgcgaggtggtcgctgcgttgcgc
gcgcatggcgtgacctgggaggagggtgcacccgccgagcacaccgctttgcccctggcc
ggcaagaccgtggtgctgaccggcactctgccgaccttgagtcgcgacgcggccaaggat
ttgctggaggccgccggcgccaaggtggcaggctcggtcagcaagaagacgcactacgtc
gtcgccggtgccgaggcgggcagcaagctcgccagggccgaggagttgggcatcccggtg
ctggacgaggacggcctgcgcgcgctgctgcgcggggcgctgtag
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